Hg_chrom4_TN10mRNA_7839
Organism: Heterodera glycines Gene Locus: chr4:5321760-5324629 Feature type: polypeptideProtein Sequence
Length: 674
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.569 | 1.829 | 0.809 | 0.972 | 0.964 | 1.522 | 0.389 | 1.409 | 0.989 | 1.383 | 0.989 | 0.96 | 1.855 | 0.656 | 1.484 | 1.229 | 1.022 | 0.629 | 1.141 | 0.436 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7384
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKDQFEATKKWRKALK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.251
|
0.265
|
0.018
|
0.599
|
0.163
|
0.306
|
0.362
|
0.089
|
0.309
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002080
|
2.000
|
2.000
|
Hsc_gene_10289.t1;Hsc_gene_10289.t2
|
Hsc_gene_10289.t1;Hsc_gene_10289.t2
|
— | — |
KAI1707043.1 domain found in dishevelled, egl-10, and pleckstrin (DEP) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0035556
|
GO:0008150_0.961|GO:0009987_0.910|GO:0065007_0.886|GO:0050789_0.879|GO:0050794_0.864|GO:0005575_0.663|GO:0110165_0.656|GO:0005622_0.607|GO:0016020_0.584|GO:0043226_0.567|GO:0043229_0.553|GO:0043227_0.524|GO:0043231_0.507
|
IPR000591+32-113_36-111+|IPR036388+13-112+|IPR036390+22-133+
|
SM00049+32-113+
|
PF00610+36-111+Domain_found_in_Dishevelled,_Egl-10,_and_Pleckstrin_(DEP)
|
— |
PTHR16206+16-664+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
669-674
|
1.000
|
1-668
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.849
|
78206.900
|
9.626
|
33.500
|
26.855
|
12.463
|
55.490
|
44.510
|
16.617
|
10.237
|
45.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightyellow
|
1150.829
|
112.893
|
149.814
|
431.701
|
661.707
|
864.084
|
1056.448
|
667.217
|
2.764
|
3553.853
|
2031.958
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.798
|
1.637
|
0.585
|
0.400
|
0.296
|
— |
0.805
|
-10.557
|
7.591
|
— | — | — |
No JSON data available for plots.