SCN Proteipedia

Hg_chrom4_TN10mRNA_7840

Organism: Heterodera glycines Gene Locus: chr4:5325565-5334394 Feature type: polypeptide

Protein Sequence

Length: 1,535

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.841	0.848	0.817	0.449	0.901	1.036	0.636	0.977	1.506	1.928	0.76	1.15	1.755	0.639	0.997	1.312	0.822	0.938	1.002	0.69	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7385	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	RKAILLSNEARKTRT	49-79	0.955	—	—	—	—	0.000	—	—	0.094	0.088	0.010	0.109	0.400	0.696	0.338	0.065	0.693	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008579	1.000	1.000	Hsc_gene_10290.t1	Hsc_gene_10290.t1	—	Q5F364.1 Multidrug resistance-associated protein 1 [Gallus gallus]	KAI1700651.1 ABC transporter transmembrane region domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016020\|GO:0016887\|GO:0022857\|GO:0055085\|GO:0140359	GO:0008150_0.903\|GO:0005575_0.857\|GO:0110165_0.857\|GO:0016020_0.829\|GO:0005886_0.772\|GO:0071944_0.772\|GO:0009987_0.764\|GO:0051179_0.728\|GO:0006810_0.727\|GO:0051234_0.727\|GO:0003674_0.639\|GO:0055085_0.617\|GO:0050896_0.546\|GO:0005215_0.536\|GO:0022857_0.536	IPR003439+649-872_664-798_1290-1524_1307-1455+\|IPR003593+673-848_1316-1501+\|IPR005292+27-1514+\|IPR011527+333-616_336-603_965-1239_965-1252+\|IPR017871+771-785+\|IPR027417+642-868_643-863_1274-1527_1282-1514+\|IPR036640+301-633_321-624_929-1270_965-1273+\|IPR050173+199-1524+	SM00382+673-848_1316-1501+	PF00005+664-798_1307-1455+ABC_transporter\|PF00664+336-603_965-1239+ABC_transporter_transmembrane_region	G3DSA:1.20.1560.10:FF:000001+928-1270+ATP-binding_cassette_subfamily_C_member_1\|G3DSA:1.20.1560.10:FF:000020+303-632+ABC_metal_ion_transporter\|G3DSA:3.40.50.300:FF:000074+1275-1524+Multidrug_resistance-associated_protein_5_isoform_1\|G3DSA:3.40.50.300:FF:000997+631-898+Multidrug_resistance-associated_protein_1	PTHR24223+199-1524+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1535	8wi4_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.672	172132.770	7.532	15.000	21.759	11.922	43.648	56.352	11.857	9.902	45.733

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	midnightblue	3295.053	4476.450	3788.489	3348.141	3207.426	2844.649	4723.381	2789.837	2360.157	3203.851	2842.268

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.470	-0.556	—	—	-0.159	0.741	—	0.901	—	—	—	—	—

No JSON data available for plots.

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