SCN Proteipedia

Hg_chrom4_TN10mRNA_7841

Organism: Heterodera glycines Gene Locus: chr4:5335750-5347051 Feature type: polypeptide

Protein Sequence

Length: 2,263

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.838	1.285	0.731	0.716	0.891	2.481	0.537	1.657	1.07	1.379	0.67	1.898	1.338	1.003	1.055	1.111	0.645	0.817	0.782	0.689	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7386	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.912

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRVK,RGQKRKK	—	—	—	—	—	—	0.000	—	—	0.719	0.048	0.006	0.406	0.072	0.177	0.156	0.013	0.062	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008580	1.000	1.000	Hsc_gene_10291.t1	Hsc_gene_10291.t1	—	Q20497.2 Mediator of RNA polymerase II transcription subunit 12 [Caenorhabditis elegans]	KAI1728879.1 eukaryotic mediator 12 subunit domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.975\|GO:0065007_0.971\|GO:0050789_0.970\|GO:0009987_0.967\|GO:0050794_0.967\|GO:0005575_0.842\|GO:0110165_0.837\|GO:0005622_0.802\|GO:0032502_0.794\|GO:0048856_0.794\|GO:0032501_0.784\|GO:0016020_0.780\|GO:0043226_0.760\|GO:0007275_0.758\|GO:0043229_0.749\|GO:0048513_0.738\|GO:0003674_0.724\|GO:0005488_0.724\|GO:0005634_0.723\|GO:0043227_0.723\|GO:0043231_0.723\|GO:0008152_0.722\|GO:0019222_0.722\|GO:0031323_0.722\|GO:0044237_0.722\|GO:0044238_0.719\|GO:0080090_0.719\|GO:0048518_0.717\|GO:0048522_0.716\|GO:0043170_0.714\|GO:0060255_0.714\|GO:0006139_0.710\|GO:0016070_0.710\|GO:0019219_0.710\|GO:0051252_0.710\|GO:0090304_0.710\|GO:0006351_0.705\|GO:0006355_0.705\|GO:0009058_0.705\|GO:0009059_0.705\|GO:0009889_0.705\|GO:0010467_0.705\|GO:0010468_0.705\|GO:0010556_0.705\|GO:0031326_0.705\|GO:0032774_0.705\|GO:0034654_0.705\|GO:0044249_0.705\|GO:0141187_0.705\|GO:2001141_0.705\|GO:0140110_0.669\|GO:0009893_0.616\|GO:0050896_0.612\|GO:0010604_0.605\|GO:0023052_0.605\|GO:0007154_0.603\|GO:0009891_0.602\|GO:0031325_0.601\|GO:0045935_0.601\|GO:0051254_0.601\|GO:0051716_0.596\|GO:0010557_0.593\|GO:0031328_0.593\|GO:0045893_0.593\|GO:1902680_0.593\|GO:0007165_0.583\|GO:0005515_0.558\|GO:0048731_0.547\|GO:0060090_0.535\|GO:0007166_0.534	IPR021990+353-822+	—	PF12145+353-822+Eukaryotic_Mediator_12_subunit_domain	—	PTHR10829+680-1952+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-63;674-783;1824-2263	2.000	64-673;784-1823	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.734	256970.050	7.790	42.500	22.271	11.489	49.183	50.817	12.903	9.368	45.647

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2586.666	4607.793	3177.917	2210.391	1841.180	1991.436	2415.903	2306.080	2196.958	2712.432	2491.514

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.765	-1.197	-0.416	-0.295	—	0.288	—	0.209	—	—	—	—	—

No JSON data available for plots.

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