Hg_chrom4_TN10mRNA_7842
Organism: Heterodera glycines Gene Locus: chr4:5347126-5348915 Feature type: polypeptideProtein Sequence
Length: 463
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.954 | 1.306 | 0.903 | 0.074 | 2.376 | 0.997 | 0.797 | 0.0 | 0.528 | 1.08 | 1.865 | 2.033 | 0.96 | 0.831 | 0.837 | 0.648 | 0.673 | 1.014 | 1.163 | 0.381 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7387
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Gland3|KJ825714.1#op50jg12675.t1
|
Gland3|KJ8257141#op50jg12675t1
|
Hsc_gene_10292
|
— | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KVKK,RKKRETVQEGRKKRSI,KRDGTEGKTEEEQKKEEK
|
— | — | — | — |
1-18
|
0.945
|
0.995
|
0.000
|
0.000
|
0.339
|
0.313
|
0.047
|
0.155
|
0.322
|
0.052
|
0.131
|
0.011
|
0.074
|
0.905
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008581
|
1.000
|
1.000
|
Hsc_gene_10292.t1
|
Hsc_gene_10292.t1
|
— | — |
AJR19771.1 esophageal gland-localized secretory protein 3 [Heterodera glycines]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
103-379
|
2.000
|
1-102;380-463
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
52239.150
|
4.823
|
-13.000
|
35.637
|
6.263
|
53.780
|
46.220
|
16.415
|
19.222
|
45.356
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
44489.562
|
546.400
|
15064.374
|
8863.304
|
1287.298
|
118.268
|
190.263
|
810.203
|
240425.571
|
4242.616
|
105463.883
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.556
|
3.882
|
-0.657
|
-2.816
|
-3.429
|
0.699
|
2.687
|
-1.952
|
5.717
|
-4.594
|
— | — | — |