Hg_chrom4_TN10mRNA_7848
Organism: Heterodera glycines Gene Locus: chr4:5355241-5372252 Feature type: polypeptideProtein Sequence
Length: 3,389
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.813 | 0.995 | 1.057 | 1.587 | 1.18 | 1.218 | 0.92 | 1.638 | 0.905 | 1.184 | 0.617 | 1.024 | 1.09 | 0.857 | 1.499 | 1.189 | 0.755 | 0.72 | 0.726 | 0.729 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7391
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.870
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular|cell_membrane
|
nucleus
|
RRRMYVGGVISKHRRM,RKLNETSYRQLAEKRRTL,KRLDDGQWHRVEMAKRGKE,QKARRRRRRTMRGNRTSGRKERQKRR
|
— | — | — | — | — |
0.560
|
0.332
|
0.000
|
— |
0.136
|
0.218
|
0.029
|
0.253
|
0.102
|
0.093
|
0.167
|
0.033
|
0.570
|
0.753
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008583
|
1.000
|
1.000
|
Hsc_gene_10296.t1
|
Hsc_gene_10296.t1;Hsc_gene_10298.t1
|
— |
G5ECE3.1 Laminin subunit alpha lam-3 [Caenorhabditis elegans]
|
KAI1722233.1 laminin EGF domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.902|GO:0110165_0.896|GO:0071944_0.755|GO:0008150_0.736|GO:0032502_0.632|GO:0048856_0.632|GO:0009987_0.609|GO:0030312_0.579|GO:0031012_0.579|GO:0062023_0.579|GO:0016020_0.565|GO:0032501_0.552|GO:0005576_0.520|GO:0065007_0.507|GO:0007275_0.506
|
IPR000034+588-782_627-757_632-761_1231-1430_1277-1415_1282-1429+|IPR000742+389-440_462-503_491-502_519-566_817-865_866-913_948-985_986-1018_1100-1151_1164-1203_1473-1522_1523-1562_1578-1613+|IPR001791+2211-2389_2226-2391_2240-2390_2417-2598_2422-2578_2437-2580_2445-2579_2611-2813_2611-2832_2631-2815_2693-2816_2963-3127_2965-3143_2987-3129_3004-3129_3200-3365+|IPR002049+336-385_336-390_393-450_393-460_423-450_427-463_462-513_463-513_463-515_463-517_517-566_518-565_518-567_782-804_816-856_816-858_816-864_816-866_832-867_867-924_867-932_934-985_935-978_935-984_935-986_986-1024_987-1027_987-1031_987-1033_1034-1063_1034-1114_1081-1114_1081-1115_1117-1159_1117-1160_1117-1162_1162-1218_1163-1217_1163-1219_1188-1222_1473-1522_1474-1521_1474-1523_1524-1579_1536-1577_1549-1584_1582-1625_1582-1629_1582-1631_1582-1633+|IPR008211+88-334_90-335_95-334+|IPR013320+2211-2396_2422-2587_2608-2833_2969-3131_3283-3386+|IPR050440+91-1063+
|
SM00136+88-334+|SM00180+336-390_393-460_463-515_518-565_816-864_867-932_935-984_987-1031_1034-1114_1117-1160_1163-1217_1474-1521_1524-1579_1582-1633+|SM00181+389-440_462-503_519-566_817-865_866-913_948-985_986-1018_1100-1151_1164-1203_1473-1522_1523-1562_1578-1613+|SM00281+627-757_1277-1415+|SM00282+2226-2391_2437-2580_2631-2815_2987-3129_3200-3365+
|
PF00052+632-761_1282-1429+Laminin_B_(Domain_IV)|PF00053+393-450_463-513_518-565_782-804_816-856_867-924_935-978_987-1027_1034-1063_1081-1114_1117-1159_1163-1217_1474-1521_1524-1579_1582-1625+Laminin_EGF_domain|PF00054+2693-2816+Laminin_G_domain|PF00055+95-334+Laminin_N-terminal_(Domain_VI)|PF02210+2240-2390_2445-2579_3004-3129+Laminin_G_domain
|
G3DSA:2.10.25.10:FF:000069+359-466+Laminin_subunit_alpha_1|G3DSA:2.10.25.10:FF:000106+793-870+Heparan_sulfate_proteoglycan_2|G3DSA:2.10.25.10:FF:000130+935-986+Laminin_subunit_beta_1|G3DSA:2.10.25.10:FF:000209+1117-1163+Laminin_subunit_alpha_5|G3DSA:2.10.25.10:FF:000242+1582-1630+Laminin_subunit_alpha_1|G3DSA:2.10.25.10:FF:000580+1461-1526+Wing_blister,_isoform_B|G3DSA:2.60.120.260:FF:000017+87-358+Laminin_subunit_alpha_2
|
PTHR10574+91-1063+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1866-1974;2833-2974
|
3.000
|
1-1865;1975-2832;2975-3389
|
8dmk_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
377694.800
|
6.574
|
5.500
|
27.589
|
10.623
|
49.543
|
50.457
|
14.695
|
12.895
|
51.549
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
3378.189
|
2319.245
|
1371.494
|
3220.830
|
4963.653
|
8590.656
|
6055.340
|
2481.288
|
906.392
|
3223.843
|
2230.650
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.990
|
0.337
|
1.342
|
0.592
|
0.806
|
-0.495
|
-1.909
|
1.433
|
-1.956
|
2.011
|
— | — | — |