Hg_chrom4_TN10mRNA_7851
Organism: Heterodera glycines Gene Locus: chr4:5377517-5378815 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.994 | 0.994 | 0.622 | 1.032 | 0.641 | 0.657 | 0.661 | 0.427 | 1.425 | 1.328 | 0.648 | 0.503 | 1.543 | 0.986 | 1.744 | 2.076 | 0.841 | 0.648 | 0.657 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7394
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
12-42
|
0.998
|
— | — |
0.000
|
— | — |
0.431
|
0.339
|
0.006
|
0.557
|
0.135
|
0.130
|
0.067
|
0.049
|
0.159
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008586
|
1.000
|
1.000
|
Hsc_gene_10300.t1
|
Hsc_gene_10300.t1
|
— | — |
KAI1723206.1 SOCS box domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0035556
|
GO:0005575_0.827|GO:0110165_0.768|GO:0008150_0.746|GO:0009987_0.684|GO:0065007_0.658|GO:0005622_0.650|GO:0050789_0.649|GO:0050794_0.641|GO:0050896_0.556|GO:0051716_0.529|GO:0005737_0.528
|
IPR000980+51-136_53-112_53-127+|IPR001496+178-229_183-227_189-223_189-226+|IPR036036+181-228+|IPR036860+36-130_36-232+
|
SM00252+51-136+|SM00253+183-227+|SM00969+189-226+
|
PF00017+53-112+SH2_domain|PF07525+189-223+SOCS_box
|
— |
PTHR10155+23-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-234
|
2bbu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.898
|
25733.450
|
10.159
|
14.000
|
20.940
|
9.829
|
47.436
|
52.564
|
13.675
|
7.265
|
53.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
398.303
|
382.242
|
333.530
|
297.707
|
285.031
|
253.563
|
399.832
|
259.667
|
138.457
|
809.395
|
521.850
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.425
|
-0.498
|
— | — | — |
0.667
|
— |
0.765
|
— | — | — | — | — |
No JSON data available for plots.