SCN Proteipedia

Hg_chrom4_TN10mRNA_7854

Organism: Heterodera glycines Gene Locus: chr4:5386056-5396066 Feature type: polypeptide

Protein Sequence

Length: 787

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.975	1.271	0.832	0.832	0.911	1.173	0.65	1.715	0.847	1.648	0.751	1.046	1.306	0.88	1.374	1.107	0.708	0.982	0.88	0.523	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7397	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.644

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	34-73	0.999	—	—	0.000	—	—	0.518	0.220	0.035	0.442	0.113	0.133	0.098	0.025	0.254	0.106

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008589	1.000	1.000	Hsc_gene_10303.t1	Hsc_gene_10303.t1;Hsc_gene_10303.t2;Hsc_gene_10303.t3	—	—	KAH7728676.1 krev interaction trapped protein 1-like isoform 1 [Aphelenchus avenae]	No	-0.340

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005856	GO:0008150_0.957\|GO:0009987_0.909\|GO:0065007_0.860\|GO:0050789_0.843\|GO:0050794_0.825\|GO:0032501_0.785\|GO:0032502_0.775\|GO:0048856_0.775\|GO:0007275_0.745\|GO:0048519_0.739\|GO:0005575_0.735\|GO:0048731_0.734\|GO:0110165_0.734\|GO:0051239_0.704\|GO:0009653_0.701\|GO:0050793_0.696\|GO:2000026_0.685\|GO:0048646_0.684\|GO:0035295_0.681\|GO:0051093_0.679\|GO:0072359_0.678\|GO:0035239_0.677\|GO:0001568_0.673\|GO:0001944_0.673\|GO:0048514_0.673\|GO:0001525_0.670\|GO:0003674_0.661\|GO:0005622_0.645\|GO:0005488_0.580\|GO:0005515_0.543\|GO:0071840_0.527\|GO:0016043_0.525	IPR000299+462-787+\|IPR002110+329-358_329-361_329-392_362-392_396-426_396-429_397-428_430-463+\|IPR011993+681-780+\|IPR014352+570-680+\|IPR019748+577-686_592-678+\|IPR019749+458-686+\|IPR035963+577-681+\|IPR036770+325-398_327-440_399-458+\|IPR051594+254-769+	SM00248+329-358_362-392_396-426_430-463+\|SM00295+458-686+	PF00023+397-428+Ankyrin_repeat\|PF00373+577-686+FERM_central_domain\|PF12796+329-392+Ankyrin_repeats_(3_copies)	—	PTHR13283+254-769+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	778-787	1.000	1-777	4hrm_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.816	88117.950	8.679	26.500	25.159	11.055	47.268	52.732	15.121	10.038	49.428

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1052.608	2630.173	1530.785	878.465	866.397	1314.263	854.754	2249.575	606.733	278.454	419.145

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.010	-1.719	-0.693	—	0.616	-0.611	—	-1.259	—	—	—	—	—

No JSON data available for plots.

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