Hg_chrom4_TN10mRNA_7856
Organism: Heterodera glycines Gene Locus: chr4:5396482-5404827 Feature type: polypeptideProtein Sequence
Length: 2,038
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.438 | 0.856 | 0.558 | 0.965 | 1.032 | 0.549 | 1.619 | 1.079 | 1.525 | 0.624 | 1.126 | 1.622 | 0.887 | 1.272 | 1.542 | 0.837 | 0.736 | 1.246 | 0.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7399
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRRK,RRNTIREDEIKRRAT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.310
|
0.336
|
0.021
|
0.226
|
0.653
|
0.297
|
0.345
|
0.032
|
0.539
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008591
|
1.000
|
1.000
|
Hsc_gene_10305.t1
|
Hsc_gene_10305.t1
|
— |
Q98UF7.1 Pecanex-like protein 1 [Takifugu rubripes]
|
KAH7727243.1 Pecanex [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.976|GO:0005575_0.947|GO:0009987_0.946|GO:0110165_0.944|GO:0016020_0.915|GO:0071944_0.895|GO:0005886_0.884|GO:0005622_0.853|GO:0043226_0.836|GO:0016043_0.805|GO:0071840_0.805|GO:0043229_0.803|GO:0043227_0.767|GO:0005737_0.756|GO:0043231_0.754|GO:0006996_0.726|GO:0005773_0.702|GO:0012505_0.692|GO:0010256_0.680|GO:0007029_0.670|GO:0005783_0.590
|
IPR007735+1739-1965+|IPR039797+6-2006+
|
— |
PF05041+1739-1965+Pecanex_protein_(C-terminus)
|
— |
PTHR12372+6-2006+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
143-763;1144-1197
|
3.000
|
1-142;764-1143;1198-2038
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
230625.360
|
7.471
|
30.000
|
24.092
|
12.807
|
50.196
|
49.804
|
13.592
|
10.500
|
48.970
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
3481.544
|
8369.600
|
4159.427
|
2873.134
|
2767.025
|
2713.194
|
3484.925
|
2982.561
|
3790.126
|
2132.960
|
2843.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.239
|
-1.680
|
-0.425
|
— | — |
0.370
|
— |
0.365
|
— | — | — | — | — |
No JSON data available for plots.