Hg_chrom4_TN10mRNA_7859
Organism: Heterodera glycines Gene Locus: chr4:5411916-5414115 Feature type: polypeptideProtein Sequence
Length: 479
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.583 | 1.554 | 1.025 | 1.008 | 1.322 | 0.803 | 0.596 | 1.566 | 1.067 | 1.157 | 0.886 | 1.105 | 2.03 | 0.723 | 1.321 | 1.282 | 0.719 | 0.696 | 1.445 | 0.614 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7402
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.689
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKAEETDTLKMVRRKNS,RKEKFSHCFWPSFRWARK
|
11-33
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.357
|
0.191
|
0.014
|
0.630
|
0.253
|
0.381
|
0.431
|
0.051
|
0.152
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008593
|
1.000
|
1.000
|
Hsc_gene_10320.t2
|
Hsc_gene_10320.t1;Hsc_gene_10320.t2
|
— |
Q17848.2 Probable type I inositol 1,4,5-trisphosphate 5-phosphatase [Caenorhabditis elegans]
|
KAF7635610.1 IPPc domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004445|GO:0016791|GO:0046856
|
GO:0008150_0.714|GO:0003674_0.688|GO:0005575_0.663|GO:0009987_0.659|GO:0110165_0.653|GO:0016020_0.584|GO:0003824_0.548|GO:0016787_0.516
|
IPR000300+12-479+|IPR036691+1-479_11-478+|IPR039737+13-478+
|
SM00128+12-479+
|
PF22669+392-473+Endonuclease/Exonuclease/phosphatase_family_2
|
— |
PTHR12997+13-478+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
263-329
|
2.000
|
1-262;330-479
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
55290.340
|
6.655
|
1.500
|
29.019
|
14.405
|
52.192
|
47.808
|
15.449
|
13.570
|
46.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1145.396
|
1482.512
|
1833.286
|
1293.564
|
1126.593
|
1348.681
|
1057.111
|
1399.935
|
736.414
|
880.664
|
818.843
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.334
|
-0.394
|
-0.232
|
0.275
|
-0.343
|
— |
-0.264
|
— | — | — | — | — |
No JSON data available for plots.