Hg_chrom4_TN10mRNA_7865
Organism: Heterodera glycines Gene Locus: chr4:5430208-5432527 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.827 | 0.919 | 0.719 | 0.545 | 0.758 | 0.912 | 0.871 | 1.087 | 0.834 | 1.789 | 0.868 | 1.628 | 2.031 | 0.988 | 1.654 | 0.734 | 0.68 | 0.928 | 1.52 | 0.698 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7408
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRAR,KRRR
|
5-27
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.154
|
0.059
|
0.009
|
0.284
|
0.556
|
0.350
|
0.803
|
0.006
|
0.130
|
0.465
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003843
|
2.000
|
1.000
|
Hsc_gene_10317.t1
|
Hsc_gene_10317.t1
|
— |
P46555.2 D-glucuronyl C5-epimerase [Caenorhabditis elegans]
|
KAH7718300.1 D-glucuronyl C5 epimerase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015012|GO:0047464
|
GO:0008150_0.819|GO:0009987_0.764|GO:0003674_0.723|GO:0008152_0.645|GO:0044238_0.635|GO:0009058_0.629|GO:0044237_0.626|GO:0044249_0.606|GO:0043170_0.603|GO:0003824_0.598|GO:0019538_0.591|GO:0009059_0.589|GO:1901135_0.574|GO:1901137_0.555|GO:0009100_0.552|GO:0009101_0.548|GO:0006790_0.541|GO:0006029_0.537|GO:0015012_0.537|GO:0030166_0.537|GO:0044272_0.537|GO:0016853_0.506|GO:0016854_0.506|GO:0016857_0.506
|
IPR010598+311-502+|IPR039721+54-506+
|
— |
PF06662+311-502+D-glucuronyl_C5-epimerase_C-terminus
|
— |
PTHR13174+54-506+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-506
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
57821.600
|
10.473
|
32.500
|
24.506
|
13.834
|
41.304
|
58.696
|
16.008
|
8.498
|
44.466
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1772.887
|
3327.313
|
2868.598
|
1824.705
|
1490.830
|
1443.910
|
1704.802
|
2361.502
|
1975.914
|
641.324
|
1213.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.444
|
-1.004
|
-0.543
|
-0.323
|
— |
0.249
|
0.604
|
-0.327
|
— | — | — | — | — |
No JSON data available for plots.