Hg_chrom4_TN10mRNA_7866
Organism: Heterodera glycines Gene Locus: chr4:5430293-5432527 Feature type: polypeptideProtein Sequence
Length: 531
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 0.964 | 0.719 | 0.649 | 0.722 | 0.917 | 0.852 | 1.036 | 0.879 | 1.807 | 0.885 | 1.772 | 2.04 | 1.014 | 1.576 | 0.699 | 0.679 | 0.913 | 1.449 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7408
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRAR,KRRR
|
6-27
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.164
|
0.052
|
0.007
|
0.284
|
0.481
|
0.263
|
0.779
|
0.007
|
0.135
|
0.486
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003843
|
2.000
|
1.000
|
Hsc_gene_10317.t1
|
Hsc_gene_10317.t1
|
— |
P46555.2 D-glucuronyl C5-epimerase [Caenorhabditis elegans]
|
KAH7718300.1 D-glucuronyl C5 epimerase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015012|GO:0047464
|
GO:0008150_0.822|GO:0009987_0.766|GO:0003674_0.729|GO:0008152_0.644|GO:0044238_0.637|GO:0009058_0.632|GO:0044237_0.628|GO:0044249_0.607|GO:0043170_0.605|GO:0003824_0.604|GO:0019538_0.591|GO:0009059_0.588|GO:1901135_0.576|GO:1901137_0.556|GO:0009100_0.552|GO:0009101_0.549|GO:0006790_0.541|GO:0006029_0.537|GO:0015012_0.537|GO:0030166_0.537|GO:0044272_0.537|GO:0016853_0.506|GO:0016854_0.506|GO:0016857_0.506
|
IPR010598+336-527+|IPR039721+79-531+
|
— |
PF06662+336-527+D-glucuronyl_C5-epimerase_C-terminus
|
— |
PTHR13174+79-531+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-531
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
60677.120
|
10.369
|
33.500
|
23.917
|
13.748
|
40.678
|
59.322
|
15.631
|
8.286
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1772.887
|
3327.313
|
2868.598
|
1824.705
|
1490.830
|
1443.910
|
1704.802
|
2361.502
|
1975.914
|
641.324
|
1213.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.444
|
-1.004
|
-0.543
|
-0.323
|
— |
0.249
|
0.604
|
-0.327
|
— | — | — | — | — |
No JSON data available for plots.