SCN Proteipedia

Hg_chrom4_TN10mRNA_7867

Organism: Heterodera glycines Gene Locus: chr4:5432751-5436730 Feature type: polypeptide

Protein Sequence

Length: 734

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.792	0.982	1.139	0.658	1.317	1.188	0.714	1.431	1.241	1.399	1.032	0.721	1.514	0.838	0.918	0.973	0.826	0.826	0.838	0.801	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7409	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	43-75	0.976	—	—	0.000	—	—	0.785	0.126	0.013	0.551	0.143	0.126	0.112	0.003	0.057	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008596	1.000	1.000	Hsc_gene_10316.t1	Hsc_gene_10316.t1	—	Q8L6Y1.1 Ubiquitin carboxyl-terminal hydrolase 14 [Arabidopsis thaliana]	KAH7721977.1 ubiquitin carboxyl-terminal hydrolase [Aphelenchus avenae]	No	-0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004843\|GO:0008270\|GO:0016579	GO:0008150_0.888\|GO:0005575_0.881\|GO:0110165_0.880\|GO:0003674_0.769\|GO:0005622_0.754\|GO:0008152_0.710\|GO:0065007_0.686\|GO:0050789_0.679\|GO:0003824_0.659\|GO:0044238_0.617\|GO:0009987_0.609\|GO:0016020_0.603\|GO:0016787_0.601\|GO:0043170_0.584\|GO:0140096_0.583\|GO:0043226_0.578\|GO:0008233_0.566\|GO:0043229_0.561\|GO:0005737_0.547\|GO:0019783_0.547\|GO:0101005_0.547\|GO:0019538_0.538\|GO:0043227_0.533\|GO:0043231_0.511	IPR001394+315-729+\|IPR001607+163-273_187-243_188-260+\|IPR013083+6-111_151-260+\|IPR015940+596-637_598-636_598-645+\|IPR016652+10-666_651-734+\|IPR018200+316-331_677-695+\|IPR028889+315-733+\|IPR038765+311-732+\|IPR041432+23-81+\|IPR050185+283-732+	SM00165+598-636+\|SM00290+187-243+	PF00443+315-729+Ubiquitin_carboxyl-terminal_hydrolase\|PF02148+188-260+Zn-finger_in_ubiquitin-hydrolases_and_other_protein\|PF17807+23-81+Variant_UBP_zinc_finger\|PF22562+598-645+UBA-like_domain	—	PTHR21646+283-732+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	631-683	2.000	1-630;684-734	2g45_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.532	82873.980	5.628	-10.500	28.338	12.125	49.046	50.954	14.169	14.169	46.866

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	blue	4302.856	3116.482	2587.512	5202.165	5521.422	4435.577	4259.927	2505.593	2529.997	6566.743	4836.709

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.497	0.602	1.116	—	-0.301	—	-0.927	0.907	-1.491	—	—	—	—

No JSON data available for plots.

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