Hg_chrom4_TN10mRNA_7868
Organism: Heterodera glycines Gene Locus: chr4:5437513-5439362 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.547 | 1.292 | 0.389 | 1.768 | 1.068 | 1.205 | 0.458 | 2.564 | 0.855 | 1.04 | 1.166 | 1.006 | 1.187 | 1.479 | 1.395 | 1.404 | 1.331 | 0.324 | 0.0 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7410
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
36-62
|
0.988
|
— | — |
0.000
|
— | — |
0.868
|
0.117
|
0.020
|
0.286
|
0.033
|
0.010
|
0.015
|
0.011
|
0.064
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002082
|
2.000
|
2.000
|
Hsc_gene_10315.t1;Hsc_gene_10315.t2
|
Hsc_gene_10315.t1;Hsc_gene_10315.t2
|
— | — | — |
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+21-41_49-71_49-76_51-71_77-99_77-104_79-99_105-131_105-136+|IPR036236+22-71_58-114+
|
SM00355+21-41_49-71_77-99_105-131+
|
PF00096+49-71_77-99+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:001270+75-102+zinc_finger_protein_583_isoform_X1|G3DSA:3.30.160.60:FF:001498+47-74+Zinc_finger_protein_404
|
PTHR23226+21-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
126-234
|
1.000
|
1-125
|
6e94_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
26606.260
|
9.505
|
20.000
|
28.205
|
11.966
|
56.410
|
43.590
|
19.658
|
8.547
|
49.145
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
658.716
|
677.931
|
680.971
|
541.043
|
595.530
|
562.400
|
803.756
|
877.748
|
480.284
|
744.403
|
631.209
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.224
|
-0.463
|
-0.223
|
— | — |
0.526
|
0.539
|
— | — | — | — | — | — |
No JSON data available for plots.