SCN Proteipedia

Hg_chrom4_TN10mRNA_7871

Organism: Heterodera glycines Gene Locus: chr4:5442708-5445716 Feature type: polypeptide

Protein Sequence

Length: 572

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.772	1.138	0.89	0.543	1.807	1.255	0.853	1.399	0.66	1.299	0.609	0.926	1.603	0.807	1.249	1.224	0.688	0.768	1.21	0.771	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7412	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	AHSPNGAKRAAEPPKKRKR	—	—	—	—	—	—	0.000	—	—	0.859	0.100	0.009	0.383	0.036	0.042	0.077	0.005	0.028	0.101

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008597	1.000	1.000	Hsc_gene_10314.t1	Hsc_gene_10313.t1;Hsc_gene_10314.t1	—	Q3U0K8.1 Prolyl 3-hydroxylase OGFOD1 [Mus musculus]	KAI1716800.1 2OG-Fe(II) oxygenase superfamily domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005506\|GO:0016705\|GO:0016706\|GO:0031418	GO:0008150_0.949\|GO:0003674_0.865\|GO:0005575_0.814\|GO:0110165_0.813\|GO:0009987_0.801\|GO:0008152_0.790\|GO:0044238_0.776\|GO:0005622_0.774\|GO:0043170_0.760\|GO:0065007_0.744\|GO:0016020_0.737\|GO:0019538_0.732\|GO:0050789_0.732\|GO:0003824_0.720\|GO:0043226_0.720\|GO:0050794_0.708\|GO:0043229_0.704\|GO:0043412_0.699\|GO:0036211_0.695\|GO:0043227_0.681\|GO:0140096_0.681\|GO:0018126_0.670\|GO:0016491_0.660\|GO:0016705_0.655\|GO:0043231_0.651\|GO:0016706_0.650\|GO:0031543_0.650\|GO:0051213_0.650\|GO:0005737_0.640\|GO:0019222_0.633\|GO:0060255_0.623\|GO:0080090_0.622\|GO:0051246_0.593\|GO:0044237_0.574\|GO:0009058_0.567\|GO:0005634_0.555\|GO:0044249_0.546\|GO:0009059_0.541\|GO:0010467_0.538\|GO:0031323_0.534\|GO:0018193_0.532\|GO:0018208_0.526\|GO:0019511_0.526\|GO:0009889_0.519\|GO:0031326_0.519\|GO:0010468_0.517\|GO:0010556_0.517	IPR006620+47-227+\|IPR019601+262-524+\|IPR039558+131-227+\|IPR051842+8-524+	SM00702+47-227+	PF10637+262-524+Oxoglutarate_and_iron-dependent_oxygenase_degradation_C-term\|PF13661+131-227+2OG-Fe(II)_oxygenase_superfamily	—	PTHR12117+8-524+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;368-416;533-572	2.000	2-367;417-532	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.602	64813.020	4.703	-24.000	28.671	12.762	51.224	48.776	12.937	15.734	47.203

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1556.252	3160.826	1955.305	2050.764	2129.368	2147.086	1640.883	1912.476	1091.129	366.488	677.049

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.922	-0.761	0.177	—	—	-0.379	-0.270	—	—	—	—	—	—

No JSON data available for plots.

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