Hg_chrom4_TN10mRNA_7874
Organism: Heterodera glycines Gene Locus: chr4:5452948-5456648 Feature type: polypeptideProtein Sequence
Length: 342
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.292 | 1.116 | 0.907 | 1.462 | 1.425 | 0.801 | 0.731 | 0.91 | 1.067 | 0.753 | 2.924 | 1.137 | 1.125 | 1.671 | 0.919 | 0.623 | 0.665 | 1.125 | 0.516 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7414
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.510
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
RKSDRRERDIPRDREK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.078
|
0.087
|
0.009
|
0.214
|
0.402
|
0.211
|
0.106
|
0.003
|
0.747
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002083
|
2.000
|
2.000
|
Hsc_gene_10311.t1;Hsc_gene_10311.t3
|
— | — |
Q93971.4 Transient receptor potential channel [Caenorhabditis elegans]
|
KHN79108.1 Transient receptor potential channel [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.962|GO:0009987_0.928|GO:0005575_0.754|GO:0110165_0.749|GO:0051179_0.734|GO:0003674_0.732|GO:0051234_0.708|GO:0006810_0.704|GO:0016020_0.684|GO:0006811_0.628|GO:0034220_0.627|GO:0055085_0.627|GO:0006812_0.617|GO:0098655_0.615|GO:0071944_0.582|GO:0005886_0.564|GO:0065007_0.564|GO:0030001_0.559|GO:0050789_0.551|GO:0005215_0.542|GO:0005216_0.542|GO:0015075_0.542|GO:0015267_0.542|GO:0022803_0.542|GO:0022857_0.542|GO:0005261_0.517|GO:0008324_0.517|GO:0098660_0.516|GO:0050794_0.513|GO:0098662_0.513|GO:0050896_0.509
|
IPR050927+1-167+
|
— | — | — |
PTHR13800+1-167+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
198-342
|
1.000
|
1-197
|
9jjf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
39168.390
|
5.544
|
-3.500
|
29.532
|
8.772
|
50.877
|
49.123
|
14.620
|
14.912
|
46.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
orange
|
862.106
|
576.728
|
1399.911
|
610.587
|
334.303
|
1184.310
|
1287.459
|
2498.443
|
541.563
|
406.137
|
464.177
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.050
|
— |
-1.088
|
-0.902
|
1.840
|
— |
0.981
|
-0.819
|
— | — | — | — | — |
No JSON data available for plots.