Hg_chrom4_TN10mRNA_7877
Organism: Heterodera glycines Gene Locus: chr4:5459768-5462495 Feature type: polypeptideProtein Sequence
Length: 578
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.644 | 1.086 | 0.975 | 0.298 | 1.499 | 0.621 | 0.309 | 0.779 | 1.384 | 1.637 | 1.049 | 1.73 | 1.634 | 1.031 | 1.306 | 1.112 | 0.766 | 0.76 | 0.932 | 1.018 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7416
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRLYLMSKELGRRTARK
|
15-35
|
0.951
|
3-44
|
0.985
|
— | — |
0.000
|
— | — |
0.152
|
0.951
|
0.014
|
0.165
|
0.041
|
0.051
|
0.104
|
0.020
|
0.027
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008598
|
1.000
|
1.000
|
Hsc_gene_10309.t1
|
— | — |
A1Z9A8.1 Small ribosomal subunit protein mS39 [Drosophila melanogaster]
|
KHN73086.1 Protein PTCD3 -like protein, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005739|GO:0019843|GO:0032543|GO:0043024
|
GO:0005575_0.910|GO:0110165_0.909|GO:0005622_0.880|GO:0016020_0.844|GO:0043226_0.826|GO:0005737_0.818|GO:0043229_0.817|GO:0043227_0.787|GO:0043231_0.763|GO:0005739_0.567
|
IPR002885+220-257+|IPR011990+206-395+|IPR037387+346-575+
|
— |
PF22330+43-234+Small_ribosomal_subunit_protein_mS39,_PPR
|
— |
PTHR16276+346-575+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
577-578
|
1.000
|
1-576
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.559
|
67290.570
|
6.279
|
-1.500
|
29.239
|
12.111
|
48.789
|
51.211
|
14.879
|
14.360
|
41.869
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
2918.214
|
5896.729
|
3878.363
|
2560.850
|
2468.359
|
2431.227
|
2117.737
|
3209.946
|
2378.821
|
2521.866
|
2460.561
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.834
|
-1.340
|
-0.490
|
— | — | — |
0.295
|
-0.463
|
— | — | — | — | — |
No JSON data available for plots.