SCN Proteipedia

Hg_chrom4_TN10mRNA_7878

Organism: Heterodera glycines Gene Locus: chr4:5462870-5464666 Feature type: polypeptide

Protein Sequence

Length: 398

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.438	1.285	0.731	1.04	0.419	0.902	0.598	1.131	1.843	1.698	0.723	0.739	1.954	0.725	0.872	1.436	0.7	1.256	1.353	1.182	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7417	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.703

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.049	0.209	0.008	0.058	0.436	0.607	0.582	0.030	0.463	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008599	1.000	1.000	Hsc_gene_10308.t2	Hsc_gene_10308.t1;Hsc_gene_10308.t2	—	Q09500.2 Cystinosin homolog [Caenorhabditis elegans]	KAI1729565.1 PQ loop repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.925\|GO:0110165_0.925\|GO:0016020_0.870\|GO:0008150_0.823\|GO:0005622_0.781\|GO:0005737_0.777\|GO:0009987_0.769\|GO:0043226_0.749\|GO:0005773_0.732\|GO:0043227_0.732\|GO:0043229_0.732\|GO:0043231_0.732\|GO:0003674_0.720\|GO:0051179_0.697\|GO:0006810_0.693\|GO:0051234_0.693\|GO:0055085_0.624\|GO:0071705_0.582\|GO:0005215_0.577\|GO:0022857_0.577\|GO:0015711_0.550\|GO:0015849_0.545\|GO:0046942_0.545\|GO:1903825_0.543\|GO:0006865_0.542\|GO:1905039_0.542\|GO:0003333_0.540\|GO:0000101_0.532\|GO:0015804_0.532\|GO:0015807_0.532\|GO:0015811_0.532\|GO:0072337_0.532\|GO:0072348_0.532\|GO:1902475_0.532\|GO:0008514_0.526\|GO:0005342_0.523\|GO:0046943_0.523\|GO:0015171_0.520\|GO:0015179_0.516	IPR005282+120-377_136-365+\|IPR006603+136-192_147-178_274-330_287-318+	SM00679+147-178_287-318+	PF04193+136-192_274-330+PQ_loop_repeat	G3DSA:1.20.1280.290:FF:000016+271-372+Cystinosin_homolog\|G3DSA:1.20.1280.290:FF:000018+133-247+Cystinosin_homolog	PTHR13131+120-377+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-398	8dkm_P	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.877	45237.840	8.817	14.500	17.839	15.075	41.206	58.794	11.307	6.533	47.739

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	yellow	1630.553	1551.940	1517.782	1244.856	1125.830	1761.219	1362.322	2406.202	1178.910	2135.680	1725.636

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.261	-0.455	-0.178	-0.177	0.661	-0.362	0.347	-0.680	—	—	—	—	—

No JSON data available for plots.

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