Hg_chrom4_TN10mRNA_7880
Organism: Heterodera glycines Gene Locus: chr4:5469268-5472835 Feature type: polypeptideProtein Sequence
Length: 634
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.1 | 0.832 | 0.707 | 0.736 | 1.416 | 0.526 | 1.656 | 0.841 | 1.108 | 0.574 | 1.577 | 2.322 | 0.91 | 1.609 | 1.284 | 0.75 | 1.075 | 1.213 | 0.789 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7419
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.772
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — | — |
0.622
|
0.333
|
0.000
|
— |
0.193
|
0.337
|
0.016
|
0.250
|
0.221
|
0.161
|
0.133
|
0.141
|
0.193
|
0.661
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008601
|
1.000
|
1.000
|
Hsc_gene_10306.t1
|
Hsc_gene_10306.t1
|
— |
Q8JGM4.1 Sulfhydryl oxidase 1 [Gallus gallus]
|
KAI1715556.1 erv1 / alr family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016971|GO:0016972
|
GO:0005575_0.858|GO:0110165_0.852|GO:0016020_0.674|GO:0005622_0.660|GO:0008150_0.653|GO:0043226_0.615|GO:0071944_0.596|GO:0043229_0.591|GO:0005737_0.579|GO:0043227_0.579|GO:0005886_0.576|GO:0003674_0.570|GO:0009987_0.564|GO:0043231_0.560
|
IPR013766+54-191_72-159+|IPR017905+470-580_479-580+|IPR017937+93-111+|IPR036249+69-157+|IPR036774+468-615_470-582+|IPR039798+32-616+|IPR042568+329-467+
|
— |
PF00085+72-159+Thioredoxin|PF04777+479-580+Erv1_/_Alr_family
|
G3DSA:1.20.120.310:FF:000005+468-616+Sulfhydryl_oxidase
|
PTHR22897+32-616+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
630-634
|
1.000
|
1-629
|
3ed3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
73104.440
|
9.465
|
27.500
|
23.975
|
15.931
|
47.792
|
52.208
|
14.984
|
8.991
|
47.792
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
741.120
|
1355.077
|
939.326
|
973.758
|
498.266
|
2029.206
|
331.263
|
1876.261
|
154.611
|
125.255
|
137.837
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.758
|
-0.614
|
0.161
|
-0.998
|
2.040
|
-2.605
|
— |
-2.361
|
— | — | — | — | — |