Hg_chrom4_TN10mRNA_7881
Organism: Heterodera glycines Gene Locus: chr4:5479421-5480901 Feature type: polypeptideProtein Sequence
Length: 358
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.812 | 0.585 | 1.117 | 0.771 | 1.024 | 1.432 | 0.599 | 0.838 | 1.49 | 1.246 | 1.058 | 0.986 | 1.009 | 0.806 | 1.767 | 1.077 | 1.099 | 0.804 | 0.645 | 0.657 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7420
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRVK,RRKLADEIAAVIKRDRSR
|
29-49
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.888
|
0.116
|
0.031
|
0.297
|
0.095
|
0.017
|
0.044
|
0.045
|
0.054
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001277
|
5.000
|
0.000
|
0.000
|
Hsc_gene_13038.t1;Hsc_gene_19559.t1;Hsc_gene_5850.t1;Hsc_gene_761.t1;Hsc_gene_787.t1;Hsc_gene_787.t2;Hsc_gene_865.t1
|
— | — | — |
MCC6497318
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009689+156-289+
|
— |
PF06918+156-289+Protein_of_unknown_function_(DUF1280)
|
— |
PTHR31424+16-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-99
|
1.000
|
100-358
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.761
|
40610.570
|
9.619
|
15.000
|
29.609
|
8.380
|
51.955
|
48.045
|
17.318
|
12.291
|
46.648
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1492.281
|
2144.853
|
2080.510
|
1045.017
|
664.608
|
853.917
|
384.344
|
2088.128
|
1798.209
|
1707.054
|
1746.120
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.273
|
-1.175
|
-0.885
|
-0.684
|
0.376
|
-1.142
|
1.187
|
-2.300
|
— | — | — | — | — |
No JSON data available for plots.