SCN Proteipedia

Hg_chrom4_TN10mRNA_7882

Organism: Heterodera glycines Gene Locus: chr4:5481118-5495124 Feature type: polypeptide

Protein Sequence

Length: 1,443

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.862	0.838	0.907	0.812	1.421	1.155	0.899	1.421	0.77	1.32	0.767	1.06	0.943	0.773	1.655	1.386	0.829	0.798	0.586	0.53	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7421	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KKKR,RSGAKGG,KRHLFLFDGGVLFCKKRVQ	—	—	10-37	0.984	—	—	0.000	—	—	0.275	0.160	0.010	0.644	0.183	0.218	0.219	0.021	0.406	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002085	1.000	3.000	Hsc_gene_10322.t1;Hsc_gene_10322.t2;Hsc_gene_10322.t3	Hsc_gene_10322.t1;Hsc_gene_10322.t2;Hsc_gene_10322.t3;Hsc_gene_10325.t1;Hsc_gene_10325.t2;Hsc_gene_10325.t3	—	O15068.2 Guanine nucleotide exchange factor DBS [Homo sapiens]	KAI6230564.1 DH domain-containing protein [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005085	GO:0008150_0.928\|GO:0009987_0.890\|GO:0005575_0.886\|GO:0110165_0.882\|GO:0065007_0.828\|GO:0050789_0.812\|GO:0050794_0.803\|GO:0005622_0.783\|GO:0050896_0.655\|GO:0007154_0.645\|GO:0016020_0.638\|GO:0023052_0.638\|GO:0003674_0.625\|GO:0051716_0.603\|GO:0005737_0.578\|GO:0005488_0.570\|GO:0007165_0.548\|GO:0043226_0.540\|GO:0005515_0.529\|GO:0043229_0.504	IPR000219+996-1181_999-1179_1000-1179_1000-1180+\|IPR001251+339-521_428-521+\|IPR001849+1194-1323_1220-1321+\|IPR011993+1187-1335+\|IPR035899+989-1184_995-1183+\|IPR036865+422-519+\|IPR051336+346-1391+	SM00233+1194-1323+\|SM00325+1000-1180+	PF00621+1000-1179+RhoGEF_domain\|PF13716+428-521+Divergent_CRAL/TRIO_domain\|PF22697+1234-1319+SOS1/NGEF-like_PH_domain	—	PTHR22826+346-1391+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-249;868-944;1326-1443	2.000	250-867;945-1325	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.757	160297.230	7.197	15.500	29.522	8.801	52.391	47.609	16.008	13.514	49.965

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3471.423	7752.265	6870.188	2500.826	1465.466	1477.529	2687.086	3922.836	2751.304	3120.421	2962.228

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.405	-1.770	-1.349	-0.802	—	0.874	1.308	-0.404	—	—	—	—	—

No JSON data available for plots.

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