Hg_chrom4_TN10mRNA_7883
Organism: Heterodera glycines Gene Locus: chr4:5496672-5499519 Feature type: polypeptideProtein Sequence
Length: 306
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.76 | 1.748 | 1.188 | 0.451 | 1.307 | 1.508 | 0.545 | 1.471 | 0.871 | 0.927 | 1.04 | 1.922 | 1.18 | 1.131 | 1.334 | 1.354 | 0.482 | 0.644 | 0.251 | 0.673 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7422
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RPRR,KRQKNNDAVRRSRDKAKRI,RIKRQKNNDAVRRSRDKAKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.942
|
0.147
|
0.004
|
0.319
|
0.021
|
0.019
|
0.019
|
0.003
|
0.042
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008602
|
1.000
|
1.000
|
Hsc_gene_10326.t1
|
Hsc_gene_10326.t1
|
— |
H2L0N3.1 Transcription factor zip-4 [Caenorhabditis elegans]
|
KAF7635616.1 BZIP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006351|GO:0006355
|
GO:0008150_0.950|GO:0050896_0.799|GO:0006950_0.723|GO:0009605_0.690|GO:0009607_0.690|GO:0044419_0.690|GO:0043207_0.688|GO:0051707_0.687|GO:0006952_0.685|GO:0098542_0.684|GO:0009617_0.678|GO:0042742_0.676|GO:0050829_0.670|GO:0005575_0.653|GO:0110165_0.653|GO:0005622_0.622|GO:0043226_0.585|GO:0016020_0.572|GO:0009987_0.569|GO:0065007_0.567|GO:0043229_0.566|GO:0050789_0.560|GO:0050794_0.551|GO:0003674_0.527|GO:0005488_0.522|GO:0043227_0.513|GO:0043231_0.494|GO:0005634_0.493|GO:0008152_0.482|GO:0043170_0.482|GO:0019222_0.476|GO:0009058_0.475|GO:0009059_0.475|GO:0010467_0.475|GO:0044237_0.475|GO:0044249_0.475|GO:0031323_0.474|GO:0032501_0.470|GO:0060255_0.468|GO:0006139_0.466|GO:0032502_0.466|GO:0044238_0.466|GO:0048856_0.466|GO:0080090_0.466|GO:0048518_0.462|GO:0090304_0.462|GO:0034654_0.460|GO:0141187_0.460|GO:0043228_0.459|GO:0043232_0.459|GO:0005737_0.458|GO:0016070_0.457|GO:0071840_0.453|GO:0005515_0.451|GO:0032774_0.451|GO:0009889_0.448|GO:0031326_0.448|GO:0048522_0.448|GO:0010556_0.445|GO:0007275_0.444|GO:0051716_0.442|GO:0010468_0.441|GO:0016043_0.440|GO:0097159_0.436|GO:0003676_0.433|GO:0019219_0.426|GO:0009893_0.424|GO:0032991_0.424|GO:0048731_0.423|GO:0051252_0.423|GO:0006351_0.420|GO:0030154_0.419|GO:0031325_0.419|GO:0048869_0.419|GO:0010604_0.417|GO:0007154_0.413|GO:0009891_0.413|GO:2001141_0.411|GO:0006355_0.409|GO:0023052_0.408|GO:0031328_0.408|GO:0010557_0.403|GO:0048468_0.402|GO:0007165_0.397|GO:0045935_0.393|GO:0051254_0.390|GO:0006366_0.386|GO:0006996_0.385|GO:0007399_0.384|GO:0010646_0.384|GO:0048583_0.382|GO:1902680_0.381|GO:0003677_0.380|GO:0006357_0.380|GO:0051239_0.380|GO:0022008_0.379|GO:0023051_0.379|GO:0045893_0.378|GO:0050793_0.378|GO:0009653_0.375|GO:0043565_0.375|GO:0009966_0.372|GO:0033554_0.371|GO:0048699_0.371|GO:0003690_0.369|GO:1990837_0.369|GO:0051128_0.368|GO:0030182_0.367|GO:0065008_0.367|GO:0044085_0.366|GO:0045595_0.364|GO:0030030_0.363|GO:0120036_0.363|GO:0140110_0.363|GO:0000976_0.361|GO:0001067_0.361|GO:0035556_0.361|GO:0022607_0.360|GO:0040007_0.360|GO:0045944_0.360|GO:0007010_0.359|GO:0010647_0.359|GO:0048666_0.358|GO:2000026_0.358|GO:0023056_0.356|GO:1902531_0.356|GO:0007017_0.355|GO:0048584_0.355|GO:0051240_0.355|GO:0051094_0.354|GO:0048589_0.353|GO:0060284_0.353|GO:0009967_0.351|GO:0045597_0.351|GO:0050767_0.351|GO:0051960_0.351
|
IPR004827+230-277+|IPR031106+122-285+|IPR046347+225-284+
|
— |
PF07716+230-277+Basic_region_leucine_zipper
|
— |
PTHR23334+122-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;97-263
|
2.000
|
2-96;264-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
34791.800
|
6.768
|
1.500
|
30.719
|
9.804
|
56.536
|
43.464
|
16.340
|
14.379
|
49.020
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2119.975
|
4865.140
|
1371.532
|
1011.082
|
1017.532
|
1191.699
|
1289.084
|
4571.396
|
1150.371
|
2668.062
|
2017.623
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.056
|
-2.404
|
-0.332
|
— |
0.242
|
— |
1.848
|
-1.690
|
— | — | — | — | — |
No JSON data available for plots.