Hg_chrom4_TN10mRNA_7884
Organism: Heterodera glycines Gene Locus: chr4:5504438-5505060 Feature type: polypeptideProtein Sequence
Length: 155
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.525 | 1.05 | 0.938 | 0.445 | 0.645 | 0.827 | 0.845 | 0.645 | 1.864 | 0.61 | 1.857 | 1.139 | 1.971 | 0.62 | 2.107 | 0.369 | 1.058 | 1.173 | 0.496 | 1.139 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7423
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRDYLHFVPKYRRYEKRHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.524
|
0.313
|
0.319
|
0.459
|
0.214
|
0.168
|
0.081
|
0.143
|
0.109
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008603
|
1.000
|
1.000
|
Hsc_gene_10328.t1
|
Hsc_gene_10328.t1
|
— |
P61270.3 Small ribosomal subunit protein uS17 [Macaca fascicularis]
|
KAH7725474.1 40S ribosomal protein S11 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.905|GO:0110165_0.903|GO:0005622_0.865|GO:0043226_0.849|GO:0043229_0.849|GO:0005737_0.804|GO:0003674_0.764|GO:0016020_0.641|GO:0005829_0.636|GO:0005840_0.636|GO:0022626_0.636|GO:0043228_0.636|GO:0043232_0.636|GO:0008150_0.585|GO:0003735_0.552|GO:0005198_0.552|GO:0043227_0.539|GO:0043231_0.539|GO:0009987_0.536
|
IPR000266+38-154_75-141_89-112_120-130_130-137+|IPR012340+69-147+|IPR019979+120-132+|IPR032440+4-73+
|
— |
PF00366+75-141+Ribosomal_protein_S17|PF16205+4-73+Ribosomal_S17_N-terminal
|
G3DSA:2.40.50.1000:FF:000008+1-155+40S_ribosomal_protein_S11
|
PTHR10744+38-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-155
|
7nwh_LL
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.905
|
18168.300
|
11.042
|
22.000
|
32.903
|
12.903
|
49.677
|
50.323
|
23.871
|
9.032
|
42.581
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
6444.630
|
2277.973
|
4166.826
|
8236.768
|
8111.030
|
6115.910
|
4650.798
|
2808.139
|
5474.750
|
10451.401
|
8318.551
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
1.717
|
1.092
|
— |
-0.392
|
-0.385
|
-1.231
|
0.872
|
— | — | — | — | — |
No JSON data available for plots.