Hg_chrom4_TN10mRNA_7885
Organism: Heterodera glycines Gene Locus: chr4:5505655-5507917 Feature type: polypeptideProtein Sequence
Length: 423
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.715 | 1.1 | 0.946 | 0.245 | 1.576 | 1.94 | 0.478 | 0.827 | 0.893 | 0.735 | 1.146 | 1.53 | 0.657 | 1.909 | 1.496 | 1.283 | 0.891 | 0.43 | 1.091 | 0.765 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7424
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,KKIEKEEYEKKRKEM,KRIANNMLTRRKNKA,KKESTETPVGKRSRK.,RRLMTTVLLETTDREIKR,NRKRKSKRKRSEETKVKKESTETPVGKRSRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.941
|
0.065
|
0.007
|
0.235
|
0.018
|
0.015
|
0.030
|
0.144
|
0.035
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008604
|
1.000
|
1.000
|
Hsc_gene_10329.t1
|
Hsc_gene_10329.t1
|
— | — |
KAI1712827.1 arginine/serine-rich protein PNISR domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR031937+4-407_195-362+
|
— |
PF15996+195-362+Arginine/serine-rich_protein_PNISR
|
— |
PTHR31518+4-407+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-423
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
48383.920
|
7.838
|
4.500
|
31.206
|
8.038
|
57.920
|
42.080
|
16.548
|
14.657
|
47.991
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1589.272
|
1184.634
|
1489.369
|
1253.801
|
1210.995
|
1036.555
|
983.097
|
1411.773
|
2487.635
|
1873.504
|
2136.703
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.139
|
— |
-0.210
|
— |
0.340
|
-0.379
|
— | — | — | — | — |
No JSON data available for plots.