Hg_chrom4_TN10mRNA_7886
Organism: Heterodera glycines Gene Locus: chr4:5509837-5512515 Feature type: polypeptideProtein Sequence
Length: 529
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.572 | 1.099 | 0.584 | 0.847 | 0.662 | 1.6 | 0.293 | 1.323 | 1.554 | 1.865 | 0.773 | 0.667 | 2.1 | 0.691 | 1.042 | 1.215 | 0.868 | 0.945 | 1.6 | 1.168 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7425
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.956
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
SRREIGKRKLERNQKR
|
5-96
|
0.714
|
— | — | — | — |
0.000
|
— | — |
0.392
|
0.320
|
0.054
|
0.171
|
0.728
|
0.262
|
0.182
|
0.073
|
0.217
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008605
|
1.000
|
1.000
|
Hsc_gene_10330.t1
|
Hsc_gene_10330.t1;Hsc_gene_10330.t2
|
— |
Q9GZU3.1 Transmembrane protein 39B [Homo sapiens]
|
KAI1707664.1 putative transmembrane protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.771|GO:0110165_0.771|GO:0016020_0.750|GO:0008150_0.731|GO:0005886_0.717|GO:0071944_0.717|GO:0009987_0.704|GO:0005622_0.675|GO:0043226_0.649|GO:0043229_0.631|GO:0005737_0.628|GO:0043227_0.615|GO:0043231_0.601|GO:0005773_0.574|GO:0012505_0.561
|
IPR019397+15-506_53-495+
|
— |
PF10271+53-495+Putative_transmembrane_protein
|
— |
PTHR12995+15-506+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
519-529
|
1.000
|
1-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
61757.970
|
9.309
|
23.000
|
20.038
|
16.257
|
44.802
|
55.198
|
12.854
|
7.183
|
41.399
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1488.417
|
1351.044
|
1495.263
|
1153.905
|
1012.333
|
1025.697
|
943.594
|
1360.896
|
510.752
|
3000.237
|
1933.315
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.364
|
-0.265
|
-0.220
|
— | — |
0.304
|
-0.391
|
-2.671
|
— | — | — | — |
No JSON data available for plots.