SCN Proteipedia

Hg_chrom4_TN10mRNA_7888

Organism: Heterodera glycines Gene Locus: chr4:5514413-5518277 Feature type: polypeptide

Protein Sequence

Length: 492

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.685	0.756	0.924	0.841	1.524	0.678	0.532	1.524	1.22	1.126	0.955	2.152	1.92	0.86	1.493	0.929	0.633	1.201	1.094	0.538	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7427	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.974

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	—	3-25	0.885	24-44	0.999	—	—	0.000	—	—	0.694	0.494	0.062	0.311	0.038	0.017	0.039	0.115	0.044	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008607	1.000	1.000	Hsc_gene_10332.t1	Hsc_gene_10332.t1	—	A8WHT1.1 tRNA (guanine(37)-N1)-methyltransferase [Caenorhabditis elegans]	KAF7635622.1 tRNA (guanine(37)-N1)-methyltransferase [Meloidogyne graminicola]	No	-0.130

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0030488\|GO:0052906	GO:0008150_0.815\|GO:0009987_0.757\|GO:0005575_0.736\|GO:0110165_0.728\|GO:0008152_0.682\|GO:0005622_0.663\|GO:0044238_0.652\|GO:0016020_0.649\|GO:0044237_0.648\|GO:0009058_0.643\|GO:0003674_0.624\|GO:0043170_0.620\|GO:0044249_0.620\|GO:0043226_0.611\|GO:0009059_0.602\|GO:0006139_0.595\|GO:0043229_0.592\|GO:0010467_0.590\|GO:0034654_0.580\|GO:0090304_0.579\|GO:0043412_0.577\|GO:0016070_0.572\|GO:0141187_0.572\|GO:0032774_0.570\|GO:0043227_0.562\|GO:0006396_0.560\|GO:0006399_0.553\|GO:0006400_0.549\|GO:0008033_0.549\|GO:0009451_0.549\|GO:0043231_0.544\|GO:0003824_0.521\|GO:0001510_0.507\|GO:0030488_0.507\|GO:0032259_0.507\|GO:0043414_0.507	IPR025792+32-452+\|IPR029063+151-450_215-450+\|IPR030382+152-373_153-452+	—	PF02475+152-373+Met-10+_like-protein	G3DSA:3.30.300.110:FF:000001+136-212+tRNA_(guanine(37)-N1)-methyltransferase	PTHR23245+73-452+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	470-492	1.000	1-469	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.523	56946.770	7.008	4.500	30.894	13.211	47.154	52.846	16.667	14.228	43.902

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	918.109	1949.875	1280.575	1091.649	981.901	842.166	1135.023	949.149	736.168	378.224	531.629

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.836	-0.974	-0.122	-0.185	-0.207	0.441	—	0.401	—	—	—	—	—

No JSON data available for plots.

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