Hg_chrom4_TN10mRNA_7890
Organism: Heterodera glycines Gene Locus: chr4:5520839-5523909 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.497 | 1.137 | 0.704 | 0.562 | 1.527 | 1.097 | 0.703 | 1.629 | 1.584 | 1.073 | 0.71 | 2.156 | 1.471 | 0.979 | 1.621 | 1.077 | 0.668 | 0.617 | 1.723 | 0.899 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7428
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKSK,RRTIEVYVQIERIEKGGKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.157
|
0.419
|
0.056
|
0.514
|
0.315
|
0.419
|
0.422
|
0.026
|
0.419
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003845
|
2.000
|
1.000
|
Hsc_gene_10333.t1
|
Hsc_gene_10333.t1
|
— | — |
KAI6227088.1 CRAL-TRIO domain and GOLD domain-containing protein [Aphelenchoides besseyi]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001251+90-265_106-263_106-268_108-262+|IPR036598+291-434+|IPR036865+32-286_106-266+|IPR053302+19-437+
|
SM00516+90-265+
|
PF00650+108-262+CRAL/TRIO_domain
|
— |
PTHR47159+19-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;485-491
|
1.000
|
3-484
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
57362.380
|
7.195
|
6.000
|
28.921
|
13.849
|
49.695
|
50.305
|
15.886
|
13.035
|
41.344
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
613.841
|
705.886
|
483.218
|
576.818
|
1098.352
|
1012.019
|
405.618
|
749.767
|
107.507
|
718.046
|
456.387
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.777
|
-0.428
|
0.365
|
0.897
|
— |
-1.310
|
-0.540
|
-0.743
|
-2.892
|
— | — | — |
3.121
|
No JSON data available for plots.