Hg_chrom4_TN10mRNA_7894
Organism: Heterodera glycines Gene Locus: chr4:5531375-5534091 Feature type: polypeptideProtein Sequence
Length: 687
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 1.422 | 0.794 | 0.653 | 1.383 | 0.933 | 0.52 | 1.383 | 1.294 | 1.377 | 0.97 | 1.541 | 2.345 | 0.504 | 1.218 | 0.998 | 0.644 | 0.816 | 0.336 | 0.899 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7432
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRPKRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.689
|
0.026
|
0.002
|
0.521
|
0.053
|
0.097
|
0.267
|
0.030
|
0.035
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008609
|
1.000
|
1.000
|
Hsc_gene_10337.t1
|
Hsc_gene_10337.t1
|
— |
G5EDN3.1 Protein timeless homolog [Caenorhabditis elegans]
|
KAF7633691.1 TIMELESS domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.949|GO:0005575_0.916|GO:0110165_0.916|GO:0005622_0.864|GO:0016020_0.858|GO:0043226_0.820|GO:0065007_0.813|GO:0043229_0.808|GO:0050789_0.797|GO:0043227_0.779|GO:0043231_0.768|GO:0009987_0.756|GO:0050794_0.632|GO:0032501_0.605|GO:0005634_0.598|GO:0032502_0.588|GO:0048856_0.588|GO:0007275_0.567
|
IPR006906+23-276+|IPR044998+5-547+
|
— |
PF04821+23-276+Timeless_protein
|
— |
PTHR22940+5-547+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
687-687
|
1.000
|
1-686
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
79453.080
|
7.228
|
7.500
|
27.802
|
14.702
|
48.472
|
51.528
|
15.138
|
12.664
|
42.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1150.252
|
1823.566
|
1095.001
|
1144.028
|
1154.300
|
1111.856
|
1261.098
|
1177.469
|
1402.220
|
692.943
|
996.919
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.966
|
-0.810
|
0.172
|
— | — |
0.190
|
— | — | — | — | — | — | — |
No JSON data available for plots.