Hg_chrom4_TN10mRNA_7895
Organism: Heterodera glycines Gene Locus: chr4:5534093-5538615 Feature type: polypeptideProtein Sequence
Length: 1,160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.632 | 1.143 | 0.69 | 0.505 | 1.509 | 1.238 | 0.606 | 1.293 | 1.015 | 1.316 | 1.228 | 1.369 | 1.389 | 0.613 | 1.179 | 1.133 | 0.989 | 1.019 | 0.531 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7433
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKEGYSYQVDRKSLKK,KRRRLTKPTQGVKKRRLNKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.943
|
0.070
|
0.009
|
0.163
|
0.028
|
0.051
|
0.053
|
0.043
|
0.042
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008610
|
1.000
|
1.000
|
Hsc_gene_10338.t1
|
Hsc_gene_10338.t1
|
— | — |
KAI6181268.1 GB1/RHD3-type G domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000127|GO:0003677|GO:0006384
|
GO:0005575_0.938|GO:0110165_0.674|GO:0032991_0.656|GO:0008150_0.634|GO:0005622_0.622|GO:0016020_0.613|GO:0009987_0.593|GO:0043226_0.589|GO:0043229_0.571|GO:0003674_0.548|GO:0043227_0.525|GO:0043231_0.507
|
IPR044210+947-1111+
|
— | — | — |
PTHR15180+947-1111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14;344-402;704-764
|
3.000
|
15-343;403-703;765-1160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
132531.280
|
8.619
|
27.000
|
29.310
|
11.034
|
53.017
|
46.983
|
16.466
|
12.845
|
44.569
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
1725.890
|
1930.509
|
2127.017
|
2033.986
|
2066.181
|
1891.113
|
1591.991
|
1900.593
|
1817.028
|
1109.978
|
1412.999
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-0.240
|
— | — | — | — | — | — | — |
No JSON data available for plots.