SCN Proteipedia

Hg_chrom4_TN10mRNA_7898

Organism: Heterodera glycines Gene Locus: chr4:5544015-5547275 Feature type: polypeptide

Protein Sequence

Length: 727

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.848	0.992	1.2	0.617	1.215	1.058	0.622	1.032	1.559	1.394	0.875	1.78	1.07	0.741	1.319	0.747	0.744	1.105	0.317	1.052	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7436	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.674	0.201	0.030	0.524	0.082	0.096	0.087	0.043	0.089	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008613	1.000	1.000	Hsc_gene_10341.t1	Hsc_gene_10341.t1	—	Q6NX31.1 DNA replication licensing factor mcm7 [Xenopus tropicalis]	KAF7633698.1 DNA replication licensing factor MCM7 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006260\|GO:0006270\|GO:0016887\|GO:0032508\|GO:0042555	GO:0008150_0.862\|GO:0005575_0.855\|GO:0110165_0.817\|GO:0009987_0.780\|GO:0005622_0.741\|GO:0016020_0.738\|GO:0043226_0.694\|GO:0008152_0.692\|GO:0044238_0.675\|GO:0043229_0.672\|GO:0044237_0.663\|GO:0043227_0.661\|GO:0009058_0.646\|GO:0043231_0.643\|GO:0043170_0.636\|GO:0044249_0.635\|GO:0009059_0.612\|GO:0006139_0.608\|GO:0071840_0.598\|GO:0034654_0.593\|GO:0016043_0.591\|GO:0032991_0.591\|GO:0090304_0.589\|GO:0141187_0.583\|GO:0006259_0.570\|GO:0071897_0.567\|GO:0006260_0.563\|GO:0006996_0.555\|GO:0006261_0.542\|GO:0005634_0.530	IPR001208+331-547_338-543_378-393_438-452_466-479_490-502_517-525+\|IPR003593+379-531+\|IPR008050+133-145_171-182_189-200_206-218_298-308_342-646+\|IPR012340+19-307_156-284+\|IPR018525+446-454+\|IPR027417+324-651_348-644+\|IPR027925+11-145+\|IPR031327+8-691_152-648+\|IPR033762+156-286+\|IPR041562+564-644+	SM00350+152-648+\|SM00382+379-531+	PF00493+331-547+MCM_P-loop_domain\|PF14551+11-145+MCM_N-terminal_domain\|PF17207+156-286+MCM_OB_domain\|PF17855+564-644+MCM_AAA-lid_domain	G3DSA:2.20.28.10:FF:000004+183-237+DNA_replication_licensing_factor_MCM7\|G3DSA:3.40.50.300:FF:000826+323-653+Replicative_DNA_helicase_Mcm	PTHR11630+8-691+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-727	6u0m_3	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.552	82508.940	6.041	-4.500	28.198	9.904	46.355	53.645	14.305	13.893	46.080

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	magenta	751.616	310.649	321.846	1213.490	1826.882	1099.650	1538.435	342.664	67.676	742.458	453.266

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	1.829	2.026	0.558	-0.717	0.494	-1.795	2.311	—	—	—	—	—

No JSON data available for plots.

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