Hg_chrom4_TN10mRNA_7899
Organism: Heterodera glycines Gene Locus: chr4:5547702-5551761 Feature type: polypeptideProtein Sequence
Length: 910
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.124 | 1.15 | 0.999 | 0.909 | 1.465 | 0.93 | 0.602 | 0.604 | 1.221 | 1.708 | 1.049 | 1.293 | 0.885 | 0.486 | 1.301 | 0.973 | 0.558 | 0.982 | 0.592 | 0.517 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7437
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.417
|
0.134
|
0.014
|
0.699
|
0.252
|
0.173
|
0.204
|
0.083
|
0.237
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008614
|
1.000
|
1.000
|
Hsc_gene_10342.t1
|
Hsc_gene_10342.t1;Hsc_gene_10343.t1
|
— |
Q6DGE9.2 Protein unc-45 homolog B [Danio rerio]
|
KAI1724207.1 myosin-binding striated muscle assembly central domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.782|GO:0005575_0.778|GO:0110165_0.778|GO:0009987_0.736|GO:0005622_0.710|GO:0003674_0.690|GO:0005737_0.635|GO:0005488_0.611|GO:0005515_0.578|GO:0043226_0.511
|
IPR011989+113-469_470-876+|IPR011990+4-102_6-112+|IPR016024+364-841+|IPR019734+26-59_60-93+|IPR024660+288-474+
|
SM00028+26-59_60-93+
|
PF11701+288-474+Myosin-binding_striated_muscle_assembly_central
|
— |
PTHR45994+7-565+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-910
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.519
|
101554.910
|
6.080
|
-3.500
|
28.791
|
6.923
|
47.582
|
52.418
|
14.505
|
14.286
|
47.033
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2333.759
|
4580.451
|
2563.357
|
2759.930
|
2660.151
|
2604.636
|
2005.396
|
2692.633
|
1844.433
|
1376.913
|
1577.279
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.067
|
-0.868
|
0.215
|
— | — |
-0.368
|
— |
-0.284
|
— | — | — | — | — |
No JSON data available for plots.