Hg_chrom4_TN10mRNA_7901
Organism: Heterodera glycines Gene Locus: chr4:5558975-5561294 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.532 | 1.009 | 0.92 | 0.665 | 1.004 | 0.865 | 1.004 | 0.964 | 1.499 | 0.619 | 0.913 | 1.701 | 1.272 | 1.483 | 1.574 | 0.861 | 1.383 | 0.694 | 1.112 | 1.063 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7439
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.691
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PLRRERSERDGEKRRGNKEQKGGKERGKGRERGKGKTQKRSYKS
|
— | — |
59-81
|
0.997
|
— | — |
0.021
|
— | — |
0.114
|
0.094
|
0.056
|
0.249
|
0.101
|
0.071
|
0.133
|
0.005
|
0.155
|
0.958
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008615
|
1.000
|
1.000
|
Hsc_gene_10345.t1
|
Hsc_gene_10345.t1
|
— |
P91828.2 Zinc metalloproteinase nas-5 [Caenorhabditis elegans]
|
KAI1718014.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.759|GO:0005575_0.656|GO:0110165_0.647|GO:0003674_0.614|GO:0032501_0.512
|
IPR001506+71-280_92-280_109-127_167-185_186-203_225-240_265-278+|IPR006026+80-230+|IPR024079+62-282+|IPR034035+92-277+
|
SM00235+80-230+
|
PF01400+92-280+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+80-317+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
289-415
|
1.000
|
1-288
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
46943.330
|
9.335
|
15.000
|
26.747
|
11.566
|
48.916
|
51.084
|
15.663
|
11.084
|
51.084
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
60.628
|
52.645
|
71.012
|
22.370
|
18.872
|
11.290
|
30.455
|
30.625
|
0.514
|
175.886
|
100.727
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.372
|
-1.559
|
— | — |
1.446
|
1.333
|
— | — |
4.856
|
— | — | — |
No JSON data available for plots.