Hg_chrom4_TN10mRNA_7903
Organism: Heterodera glycines Gene Locus: chr4:5566884-5568481 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.348 | 1.532 | 0.544 | 0.619 | 1.497 | 1.075 | 0.57 | 1.796 | 0.931 | 1.537 | 0.998 | 0.352 | 1.996 | 0.806 | 0.978 | 1.112 | 0.491 | 1.542 | 0.461 | 1.057 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7441
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.658
|
0.319
|
0.035
|
0.594
|
0.157
|
0.434
|
0.134
|
0.062
|
0.075
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008617
|
1.000
|
1.000
|
Hsc_gene_10348.t1
|
Hsc_gene_10348.t1
|
— |
Q17427.1 Glucosamine 6-phosphate N-acetyltransferase [Caenorhabditis elegans]
|
KAF7632540.1 Glucosamine 6-phosphate N-acetyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
GO:0008150_0.819|GO:0005575_0.787|GO:0110165_0.782|GO:0003674_0.774|GO:0008152_0.674|GO:0003824_0.668|GO:0005622_0.661|GO:0005737_0.642|GO:0016740_0.632|GO:0016020_0.601|GO:0016746_0.601|GO:0016747_0.593|GO:0043226_0.593|GO:1901135_0.593|GO:0043229_0.579|GO:0006040_0.563|GO:0009987_0.558|GO:0043227_0.558|GO:0043231_0.555|GO:0004343_0.546|GO:0008080_0.546|GO:0016407_0.546|GO:0016410_0.546|GO:0009058_0.542
|
IPR000182+21-167_51-154+|IPR016181+16-159+|IPR039143+18-155+
|
— |
PF00583+51-154+Acetyltransferase_(GNAT)_family
|
— |
PTHR13355+18-155+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-167
|
3cxs_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
19293.070
|
7.040
|
2.000
|
26.946
|
14.970
|
48.503
|
51.497
|
14.970
|
11.976
|
44.311
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
371.657
|
188.330
|
311.225
|
121.283
|
187.040
|
396.428
|
568.928
|
276.651
|
763.311
|
284.810
|
489.882
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.492
|
-0.772
|
-1.248
|
0.593
|
1.098
|
0.529
|
-0.627
|
1.181
|
— | — | — | — | — |
No JSON data available for plots.