SCN Proteipedia

Hg_chrom4_TN10mRNA_7904

Organism: Heterodera glycines Gene Locus: chr4:5568648-5571330 Feature type: polypeptide

Protein Sequence

Length: 481

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.749	0.967	1.058	0.502	1.629	1.333	0.792	0.728	0.878	0.899	0.945	1.834	1.04	0.84	2.037	0.98	0.75	1.008	0.16	0.795	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7442	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.635

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KAERERERKSDRERERKKKSKRTSRDRSRSKSRERKRSRERRRSRSRSKERHRERERSREKERGEKRSKVKS	—	—	—	—	—	—	0.000	—	—	0.846	0.018	0.003	0.143	0.074	0.035	0.059	0.001	0.079	0.049

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002086	2.000	2.000	Hsc_gene_10349.t1;Hsc_gene_10349.t3	Hsc_gene_10349.t1;Hsc_gene_10349.t2	—	P90727.2 Splicing factor U2AF 65 kDa subunit [Caenorhabditis briggsae]	KAI1730953.1 RNA recognition motif domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0005634\|GO:0006397	GO:0008150_0.875\|GO:0005575_0.853\|GO:0110165_0.853\|GO:0009987_0.837\|GO:0005622_0.809\|GO:0016020_0.807\|GO:0043226_0.800\|GO:0043229_0.788\|GO:0003674_0.778\|GO:0005488_0.762\|GO:0008152_0.739\|GO:0043170_0.739\|GO:0043227_0.716\|GO:0044238_0.713\|GO:0009058_0.696\|GO:0009059_0.696\|GO:0010467_0.696\|GO:0044237_0.696\|GO:0044249_0.696\|GO:0043231_0.691\|GO:0006139_0.684\|GO:0090304_0.670\|GO:0016070_0.660\|GO:0034654_0.657\|GO:0005634_0.651\|GO:0141187_0.651\|GO:0032774_0.643\|GO:0097159_0.613\|GO:0003676_0.580\|GO:0006396_0.550\|GO:0003723_0.505\|GO:0065007_0.505	IPR000504+171-253_172-249_278-356_279-352_280-349_385-473_386-469_409-466+\|IPR003954+387-469+\|IPR006529+52-481+\|IPR012677+171-351_274-329_381-481+\|IPR035979+171-253_277-473+	SM00360+172-249_279-352_386-469+\|SM00361+387-469+	PF00076+280-349_409-466+RNA_recognition_motif	G3DSA:3.30.70.330:FF:000074+274-329+U2_snRNP_auxiliary_factor_large_subunit\|G3DSA:3.30.70.330:FF:000097+381-481+U2_snRNP_auxiliary_factor_large_subunit	PTHR23139+47-477+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-164	1.000	165-481	6tr0_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.728	54852.840	8.143	6.500	33.264	8.108	54.054	45.946	17.672	15.593	46.985

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	7606.897	9405.777	10726.519	7708.480	5991.523	5635.706	5474.485	8455.808	11450.208	4668.158	7574.751

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.424	-0.367	-0.396	—	—	0.478	-0.483	—	—	—	—	—

No JSON data available for plots.

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