Hg_chrom4_TN10mRNA_7906
Organism: Heterodera glycines Gene Locus: chr4:5576787-5578029 Feature type: polypeptideProtein Sequence
Length: 124
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.469 | 0.938 | 1.32 | 0.834 | 1.075 | 0.62 | 0.768 | 2.419 | 0.717 | 1.635 | 1.344 | 2.372 | 0.896 | 0.931 | 0.987 | 0.922 | 0.793 | 0.855 | 1.861 | 0.474 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7443
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.898
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.206
|
0.489
|
0.017
|
0.698
|
0.393
|
0.396
|
0.330
|
0.051
|
0.338
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000849
|
1.000
|
5.000
|
Hsc_gene_10351.t1;Hsc_gene_10351.t2;Hsc_gene_22292.t1;Hsc_gene_22292.t2;Hsc_gene_22292.t3
|
Hsc_gene_10351.t1;Hsc_gene_22292.t1;Hsc_gene_22292.t3
|
— |
Q28CZ9.1 Cytochrome b5 reductase 4 [Xenopus tropicalis]
|
KAF7633712.1 Cytochrome b5 heme-binding domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0020037
|
GO:0005575_0.838|GO:0110165_0.828|GO:0008150_0.754|GO:0005622_0.749|GO:0005737_0.697|GO:0016020_0.647|GO:0009987_0.607|GO:0043226_0.586|GO:0043229_0.568|GO:0003674_0.564|GO:0043227_0.560|GO:0043231_0.551
|
IPR001199+32-108_35-108_37-106_57-67_67-81_82-89_95-107+|IPR018506+63-70+|IPR036400+32-116_34-118+|IPR051872+2-111+
|
SM01117+35-108+
|
PF00173+37-106+Cytochrome_b5-like_Heme/Steroid_binding_domain
|
G3DSA:3.10.120.10:FF:000001+30-112+Cytochrome_b5_reductase_4
|
PTHR46237+2-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
119-124
|
1.000
|
1-118
|
3lf5_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
14192.330
|
7.402
|
3.000
|
32.258
|
12.097
|
50.000
|
50.000
|
18.548
|
13.710
|
45.968
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
399.777
|
638.482
|
624.576
|
566.901
|
444.283
|
465.892
|
376.655
|
550.183
|
102.604
|
296.959
|
213.664
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.260
|
-0.308
|
— |
-0.383
|
— |
-0.297
|
— |
-0.405
|
— | — | — | — | — |
No JSON data available for plots.