Hg_chrom4_TN10mRNA_7908
Organism: Heterodera glycines Gene Locus: chr4:5588560-5590042 Feature type: polypeptideProtein Sequence
Length: 242
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.817 | 1.345 | 1.127 | 0.285 | 1.446 | 1.06 | 0.885 | 0.826 | 1.102 | 1.843 | 0.877 | 1.458 | 1.148 | 0.556 | 1.349 | 0.708 | 0.677 | 1.127 | 0.318 | 0.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7445
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.828
|
0.111
|
0.001
|
0.630
|
0.133
|
0.080
|
0.099
|
0.002
|
0.029
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001033
|
3.000
|
2.000
|
Hsc_gene_10352.t1;Hsc_gene_22293.t1
|
Hsc_gene_10352.t1
|
— |
O61742.2 26S proteasome non-ATPase regulatory subunit 4 [Caenorhabditis elegans]
|
KAF7636355.1 VWFA domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.904|GO:0110165_0.899|GO:0005622_0.853|GO:0008150_0.723|GO:0016020_0.677|GO:0043226_0.648|GO:0003674_0.646|GO:0043229_0.633|GO:0005488_0.594|GO:0043227_0.593|GO:0005737_0.590|GO:0032991_0.584|GO:0008152_0.578|GO:0043231_0.573|GO:0009987_0.564|GO:0044238_0.560|GO:0005515_0.548|GO:0043170_0.540|GO:0019538_0.520
|
IPR002035+6-114+|IPR003903+212-231+|IPR036465+3-189_4-168+
|
— |
PF13519+6-114+von_Willebrand_factor_type_A_domain
|
G3DSA:3.40.50.410:FF:000005+3-190+26S_proteasome_non-ATPase_regulatory_subunit_4
|
PTHR10223+3-236+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
219-242
|
1.000
|
1-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
27001.940
|
5.217
|
-4.000
|
28.926
|
7.025
|
47.934
|
52.066
|
14.050
|
14.876
|
46.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3450.656
|
4962.663
|
2941.731
|
3341.602
|
3364.550
|
3686.327
|
2652.540
|
4478.920
|
1734.893
|
4259.826
|
3177.712
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.985
|
-0.708
|
0.293
|
— | — |
-0.464
|
— |
-0.612
|
-1.406
|
— | — | — | — |
No JSON data available for plots.