SCN Proteipedia

Hg_chrom4_TN10mRNA_7909

Organism: Heterodera glycines Gene Locus: chr4:5590777-5598745 Feature type: polypeptide

Protein Sequence

Length: 1,670

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.752	0.863	0.74	1.9	1.487	1.167	1.027	1.347	0.639	0.914	0.69	1.057	1.015	1.094	1.638	1.257	0.834	0.635	2.395	0.264	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7446	—	—	1.222	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	chloroplast	KRHR,RRKR,AAAED,KRRRRRK,KRAKEGKIMEEGKRAKD,KRAKEGKIMEEGKRAKE,KRGDEEWENGEEYLVYRRK,RRKEMDEAKFGKWKRTKRK,RKEMDEAKFGKWKRTKRKS,KRAKDEWPMWKTVEERKRA,RRCLNGLCPPGEALREQKR	40-60	0.983	88-110	0.958	—	0.546	0.035	0.000	—	0.224	0.216	0.025	0.339	0.156	0.119	0.209	0.100	0.301	0.727

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002088	1.000	3.000	Hsc_gene_10353.t1;Hsc_gene_10353.t2;Hsc_gene_10353.t3	—	—	G5ECS8.1 A disintegrin and metalloproteinase with thrombospondin motifs adt-1 [Caenorhabditis elegans]	KAI6232445.1 Peptidase M12B domain-containing protein [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004222\|GO:0006508\|GO:0008237	GO:0008150_0.923\|GO:0009987_0.728\|GO:0005575_0.723\|GO:0110165_0.723\|GO:0032501_0.672\|GO:0032502_0.642\|GO:0048856_0.588\|GO:0065007_0.579\|GO:0050789_0.571\|GO:0007275_0.531\|GO:0016020_0.507\|GO:0048731_0.505	IPR000884+828-882_831-882_833-878_883-928_885-933_886-932_932-989_935-989_936-988_996-1041_997-1041_998-1040_1046-1096_1049-1096_1050-1076_1098-1149_1099-1145_1185-1236_1186-1236_1187-1235_1255-1305_1258-1307_1259-1301_1319-1377_1322-1377_1323-1364_1382-1438_1385-1438_1387-1434_1467-1524_1470-1524_1471-1519+\|IPR001590+369-571_390-584+\|IPR002870+59-123+\|IPR024079+368-601+\|IPR036383+828-879_830-874_881-932_933-988_934-988_991-1044_997-1040_1045-1097_1047-1095_1163-1243_1186-1235_1256-1302_1256-1305_1318-1373_1320-1369_1380-1435_1381-1431_1460-1528_1467-1520+\|IPR052065+1048-1124+	SM00209+831-882_885-933_935-989_996-1041_1049-1096_1098-1149_1185-1236_1258-1307_1322-1377_1385-1438_1470-1524+	PF00090+833-878_886-932_936-988_998-1040_1050-1076_1099-1145_1187-1235_1259-1301_1323-1364_1387-1434_1471-1519+Thrombospondin_type_1_domain\|PF01421+390-584+Reprolysin_(M12B)_family_zinc_metalloprotease\|PF01562+59-123+Reprolysin_family_propeptide	G3DSA:2.20.100.10:FF:000001+1318-1376+semaphorin-5A_isoform_X1\|G3DSA:2.20.100.10:FF:000002+1380-1437+Unc-5_netrin_receptor_C	PTHR22906+1048-1124+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	189-330;1539-1610	3.000	1-188;331-1538;1611-1670	6ool_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.806	186939.820	7.037	15.500	28.263	10.359	50.419	49.581	15.269	12.994	52.156

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	lightyellow	1365.682	340.285	42.695	23.886	1098.355	2475.615	78.322	494.197	10.331	4259.604	2438.487

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-3.227	-3.971	-0.728	5.492	1.189	-4.974	-2.439	-2.512	-8.817	—	—	—	—

Properties

Window size Custom profile

Custom patterns

Back to Browser