Hg_chrom4_TN10mRNA_7910
Organism: Heterodera glycines Gene Locus: chr4:5600400-5602627 Feature type: polypeptideProtein Sequence
Length: 504
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.107 | 0.877 | 0.974 | 0.821 | 0.959 | 1.068 | 1.11 | 1.389 | 1.411 | 0.938 | 0.932 | 1.984 | 1.157 | 0.801 | 1.093 | 0.765 | 0.585 | 1.263 | 0.305 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7447
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.585
|
0.371
|
0.078
|
0.586
|
0.203
|
0.128
|
0.071
|
0.218
|
0.127
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008618
|
1.000
|
1.000
|
Hsc_gene_10354.t1
|
Hsc_gene_10354.t1
|
— |
A8QC60.1 RNA-splicing ligase RtcB homolog [Brugia malayi]
|
KAF7633005.1 tRNA-splicing ligase RtcB-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006388|GO:0006396|GO:0008452|GO:0072669|GO:0170057
|
GO:0008150_0.886|GO:0009987_0.625|GO:0005575_0.597|GO:0110165_0.580|GO:0003674_0.574
|
IPR001233+4-504_67-96_67-504+|IPR027513+1-504+|IPR036025+10-504_11-504+
|
— |
PF01139+67-504+tRNA-splicing_ligase_RtcB
|
G3DSA:3.90.1860.10:FF:000001+9-504+tRNA-splicing_ligase_RtcB_homolog
|
PTHR11118+4-504+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-504
|
8btt_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
55103.370
|
7.786
|
9.000
|
25.397
|
10.119
|
42.262
|
57.738
|
14.286
|
11.111
|
51.786
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
1013.230
|
1164.568
|
905.639
|
1166.317
|
1256.220
|
1136.723
|
1835.575
|
875.689
|
671.141
|
801.751
|
745.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.593
|
-0.135
|
0.474
|
— | — |
0.703
|
-0.481
|
1.211
|
— | — | — | — | — |
No JSON data available for plots.