SCN Proteipedia

Hg_chrom4_TN10mRNA_7911

Organism: Heterodera glycines Gene Locus: chr4:5603311-5607208 Feature type: polypeptide

Protein Sequence

Length: 864

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.686	1.05	0.947	0.798	1.138	1.306	0.413	0.984	1.389	1.642	0.737	1.021	1.961	0.757	1.11	1.339	0.569	0.982	0.979	0.783	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7448	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.757

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.818	0.104	0.002	0.451	0.044	0.049	0.037	0.044	0.119	0.016

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008619	1.000	1.000	Hsc_gene_10357.t1	Hsc_gene_10357.t1	—	G5EDT1.1 Retinoblastoma-like protein homolog lin-35 [Caenorhabditis elegans]	KAI1720623.1 retinoblastoma-associated protein A domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005634\|GO:0006357\|GO:0051726	GO:0005575_0.851\|GO:0110165_0.847\|GO:0008150_0.829\|GO:0009987_0.782\|GO:0005622_0.771\|GO:0016020_0.736\|GO:0065007_0.723\|GO:0043226_0.715\|GO:0050789_0.704\|GO:0043229_0.701\|GO:0050794_0.688\|GO:0008152_0.632\|GO:0043227_0.627\|GO:0043170_0.615\|GO:0044237_0.614\|GO:0043231_0.611\|GO:0019222_0.588\|GO:0060255_0.575\|GO:0009058_0.571\|GO:0048519_0.569\|GO:0044249_0.558\|GO:0048523_0.555\|GO:0009059_0.546\|GO:0003674_0.534\|GO:0031323_0.523	IPR002719+647-773+\|IPR002720+402-607_409-606+\|IPR013763+659-777+\|IPR024599+78-223_92-221+\|IPR028309+14-857+\|IPR036915+412-608_647-784+	SM00385+659-777+\|SM01367+78-223+\|SM01368+402-607+	PF01857+647-773+Retinoblastoma-associated_protein_B_domain\|PF01858+409-606+Retinoblastoma-associated_protein_A_domain\|PF11934+92-221+Domain_of_unknown_function_(DUF3452)	—	PTHR13742+14-857+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3	1.000	4-864	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.541	99036.770	5.888	-6.500	24.306	12.963	46.759	53.241	12.269	12.037	44.676

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	darkgrey	2226.908	2192.802	1757.592	1851.695	2175.989	2074.778	2452.908	1708.791	775.684	3830.502	2521.294

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.549	-0.381	0.184	0.201	—	0.249	-0.385	0.661	-2.416	—	—	—	—

No JSON data available for plots.

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