Hg_chrom4_TN10mRNA_7912
Organism: Heterodera glycines Gene Locus: chr4:5607267-5609851 Feature type: polypeptideProtein Sequence
Length: 585
(Signal peptide: 1-36)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 0.755 | 0.839 | 1.12 | 1.652 | 0.789 | 0.773 | 1.368 | 0.95 | 0.878 | 1.062 | 1.408 | 1.235 | 0.855 | 1.535 | 0.928 | 1.765 | 0.492 | 0.789 | 0.955 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7449
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KKFITLSIWSTRGARRHNK,RGARRHNKGNGTPKGGRTRG
|
— | — | — | — |
1-36
|
— |
0.614
|
— |
0.000
|
0.218
|
0.086
|
0.109
|
0.215
|
0.052
|
0.040
|
0.108
|
0.081
|
0.128
|
0.907
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008620
|
1.000
|
1.000
|
Hsc_gene_10358.t1
|
— | — |
Q19269.2 Zinc metalloproteinase nas-14 [Caenorhabditis elegans]
|
XP_024510854.1 Astacin-like metalloendopeptidase [Strongyloides ratti];CEF71658.1 Astacin-like metalloendopeptidase [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.759|GO:0005575_0.669|GO:0110165_0.667|GO:0003674_0.620|GO:0032501_0.548|GO:0032502_0.509|GO:0048856_0.509
|
IPR001506+148-344_157-343_178-196_234-252_253-270_292-307_329-342+|IPR003582+502-538_503-537_550-585_551-585+|IPR006026+153-297+|IPR024079+77-346+|IPR034035+160-341+
|
SM00235+153-297+|SM00254+502-538_550-585+
|
PF01400+157-343+Astacin_(Peptidase_family_M12A)|PF01549+503-537_550-585+ShK_domain-like
|
G3DSA:3.40.390.10:FF:000015+73-346+Meprin_A_subunit
|
PTHR10127+76-443+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
309-497
|
2.000
|
1-308;498-585
|
3lqb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
66838.230
|
7.391
|
8.000
|
31.795
|
11.453
|
55.385
|
44.615
|
17.265
|
14.530
|
47.863
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
468.281
|
259.240
|
112.064
|
69.198
|
134.701
|
164.641
|
207.656
|
91.922
|
59.119
|
1614.608
|
947.970
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.442
|
-2.042
|
-0.584
|
0.929
|
0.304
|
0.346
|
-0.950
|
1.321
|
-4.884
|
— | — | — | — |