Hg_chrom4_TN10mRNA_7914
Organism: Heterodera glycines Gene Locus: chr4:5621674-5628599 Feature type: polypeptideProtein Sequence
Length: 1,303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.937 | 0.892 | 0.684 | 0.556 | 1.624 | 1.358 | 0.877 | 0.921 | 0.597 | 1.099 | 0.802 | 1.174 | 0.917 | 1.166 | 1.629 | 1.392 | 0.78 | 0.826 | 0.945 | 0.542 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7451
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.255
|
0.216
|
0.028
|
0.683
|
0.129
|
0.300
|
0.189
|
0.044
|
0.431
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008622
|
1.000
|
1.000
|
Hsc_gene_10360.t1
|
— | — |
P03949.4 Tyrosine-protein kinase abl-1 [Caenorhabditis elegans]
|
KAF7633735.1 Tyrosine-protein kinase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004713|GO:0004715|GO:0005515|GO:0005524|GO:0006468
|
GO:0008150_0.967|GO:0009987_0.878|GO:0005575_0.870|GO:0065007_0.865|GO:0110165_0.864|GO:0050789_0.834|GO:0050794_0.828|GO:0003674_0.826|GO:0003824_0.826|GO:0140096_0.826|GO:0004672_0.813|GO:0016301_0.813|GO:0016740_0.813|GO:0016772_0.813|GO:0016773_0.813|GO:0005622_0.771|GO:0032502_0.763|GO:0007154_0.761|GO:0032501_0.761|GO:0023052_0.757|GO:0050896_0.751|GO:0051716_0.724|GO:0007165_0.709|GO:0016043_0.705|GO:0071840_0.705|GO:0048856_0.693|GO:0048518_0.678|GO:0016020_0.673|GO:0048522_0.667|GO:0007275_0.664|GO:0051179_0.657|GO:0048519_0.635|GO:0048731_0.629|GO:0005886_0.628|GO:0071944_0.628|GO:0051234_0.612|GO:0005737_0.597|GO:0048583_0.594|GO:0005488_0.586|GO:0006810_0.582|GO:0008152_0.581|GO:0019538_0.581|GO:0036211_0.581|GO:0043170_0.581|GO:0043412_0.581|GO:0044238_0.581|GO:0005515_0.568|GO:0030154_0.560|GO:0048869_0.560|GO:0048523_0.558|GO:0007166_0.557|GO:0004713_0.547|GO:0010646_0.541|GO:0023051_0.539|GO:0048468_0.534|GO:0007399_0.531|GO:0006996_0.529|GO:0051128_0.528|GO:0006468_0.524|GO:0006793_0.524|GO:0006796_0.524|GO:0016310_0.524|GO:0044237_0.524|GO:0030054_0.523|GO:0009966_0.519|GO:0043226_0.515|GO:0048870_0.514|GO:0035556_0.501|GO:0043229_0.501
|
IPR000719+270-541+|IPR000980+147-230_149-224_149-239+|IPR001245+270-532_355-368_393-411_442-452_461-483_505-527+|IPR001452+45-143_48-142_51-89+|IPR008266+399-411+|IPR011009+257-540+|IPR015015+1168-1303_1214-1303+|IPR020635+270-534+|IPR035837+145-238+|IPR036028+44-89+|IPR036860+141-247_144-289+|IPR050198+109-541+
|
SM00219+270-534+|SM00252+147-230+|SM00326+48-142+|SM00808+1168-1303+
|
PF00017+149-224+SH2_domain|PF00018+51-89+SH3_domain|PF07714+270-532+Protein_tyrosine_and_serine/threonine_kinase|PF08919+1214-1303+F-actin_binding
|
G3DSA:1.10.510.10:FF:000554+358-545+Predicted_protein|G3DSA:3.30.505.10:FF:000004+140-248+Tyrosine-protein_kinase
|
PTHR24418+109-541+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
547-1145
|
2.000
|
1-546;1146-1303
|
8ssn_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.820
|
144715.100
|
7.175
|
9.000
|
28.626
|
8.212
|
52.264
|
47.736
|
15.119
|
13.507
|
50.652
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2945.605
|
5914.400
|
2371.950
|
2343.659
|
1875.010
|
1808.628
|
1587.608
|
1487.708
|
3195.383
|
3969.623
|
3637.806
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.548
|
-1.472
|
0.092
|
-0.353
|
— |
-0.178
|
-0.386
|
0.236
|
— | — | — | — | — |
No JSON data available for plots.