SCN Proteipedia

Hg_chrom4_TN10mRNA_7915

Organism: Heterodera glycines Gene Locus: chr4:5629938-5633311 Feature type: polypeptide

Protein Sequence

Length: 671

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.178	1.213	0.569	0.051	2.211	2.407	0.639	0.373	0.762	1.289	0.948	2.367	0.662	0.487	1.764	0.958	0.904	0.452	0.0	0.175	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7452	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRQAQFEEIGRRKEQ	97-118	0.998	40-62	0.989	—	—	0.000	—	—	0.444	0.047	0.018	0.733	0.034	0.043	0.108	0.005	0.095	0.119

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008623	1.000	1.000	Hsc_gene_10361.t1	Hsc_gene_10361.t1	—	Q96LB3.1 Intraflagellar transport protein 74 homolog [Homo sapiens]	KAI1727656.1 intraflagellar transport protein 74 like protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0030992\|GO:0042073\|GO:0048487\|GO:0060271	GO:0005575_0.951\|GO:0008150_0.951\|GO:0110165_0.947\|GO:0005622_0.923\|GO:0009987_0.921\|GO:0043226_0.876\|GO:0016020_0.866\|GO:0003674_0.858\|GO:0005488_0.858\|GO:0016043_0.831\|GO:0071840_0.831\|GO:0051179_0.810\|GO:0051234_0.788\|GO:0043227_0.783\|GO:0051641_0.781\|GO:0006810_0.777\|GO:0006996_0.777\|GO:0071944_0.760\|GO:0032991_0.759\|GO:0051649_0.751\|GO:0005886_0.749\|GO:0007010_0.747\|GO:0044085_0.739\|GO:0008104_0.737\|GO:0033036_0.737\|GO:0070727_0.737\|GO:0007017_0.736\|GO:0046907_0.735\|GO:0022607_0.728\|GO:0030030_0.724\|GO:0120036_0.724\|GO:0016192_0.722\|GO:0000226_0.719\|GO:0051640_0.713\|GO:0007018_0.709\|GO:0051656_0.708\|GO:0070925_0.704\|GO:0030705_0.702\|GO:0033365_0.700\|GO:0010970_0.698\|GO:0030031_0.698\|GO:0099111_0.698\|GO:0120031_0.698\|GO:0048193_0.697\|GO:0051648_0.694\|GO:0051650_0.693\|GO:0001578_0.691\|GO:0005929_0.691\|GO:0006903_0.691\|GO:0030990_0.691\|GO:0031503_0.691\|GO:0035082_0.691\|GO:0035735_0.691\|GO:0042073_0.691\|GO:0042995_0.691\|GO:0044782_0.691\|GO:0048199_0.691\|GO:0060271_0.691\|GO:0061512_0.691\|GO:0097712_0.691\|GO:0098590_0.691\|GO:0120025_0.691\|GO:1905349_0.691\|GO:0005515_0.622\|GO:0030992_0.540	IPR029602+11-661+	—	—	—	PTHR31432+11-661+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-157;193-433;572-671	2.000	158-192;434-571	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.499	75797.920	5.361	-7.500	32.042	3.726	58.867	41.133	15.648	16.393	41.729

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	957.507	3878.059	2434.127	1038.384	286.709	126.895	95.933	726.690	221.106	803.213	553.739

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.902	-2.038	-1.120	-1.887	-1.161	-0.394	2.416	-2.781	—	—	—	—	—

No JSON data available for plots.

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