Hg_chrom4_TN10mRNA_7916
Organism: Heterodera glycines Gene Locus: chr4:5633414-5634531 Feature type: polypeptideProtein Sequence
Length: 202
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.633 | 1.612 | 0.9 | 2.731 | 0.578 | 1.523 | 0.884 | 0.495 | 1.32 | 1.271 | 0.675 | 1.165 | 2.338 | 0.476 | 1.01 | 1.273 | 0.649 | 0.3 | 1.523 | 0.728 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7453
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — |
0.501
|
0.006
|
0.000
|
— |
0.152
|
0.471
|
0.107
|
0.199
|
0.287
|
0.064
|
0.157
|
0.116
|
0.223
|
0.928
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008624
|
1.000
|
1.000
|
Hsc_gene_10362.t1
|
Hsc_gene_10362.t1
|
— |
Q7M334.1 Phospholipase A2 [Oryctolagus cuniculus]
|
KAI6175614.1 Phospholipase A2 [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004623|GO:0005509|GO:0006644|GO:0016042|GO:0050482
|
GO:0008150_0.868|GO:0003674_0.839|GO:0005575_0.806|GO:0110165_0.802|GO:0009987_0.720|GO:0003824_0.688|GO:0016787_0.648|GO:0016788_0.623|GO:0008152_0.617|GO:0052689_0.612|GO:0016298_0.611|GO:0004620_0.609|GO:0004623_0.606|GO:0044238_0.598|GO:0065007_0.594|GO:0044237_0.593|GO:0050789_0.582|GO:0050896_0.537|GO:0006629_0.535|GO:0050794_0.534|GO:0044255_0.529|GO:0006793_0.520|GO:0006796_0.520|GO:0019637_0.505|GO:0006644_0.501
|
IPR001211+57-189_58-68_73-91_92-110+|IPR016090+57-172_57-189_58-172+|IPR033113+99-106+|IPR036444+57-194_58-173+
|
SM00085+57-189+
|
PF00068+58-172+Phospholipase_A2
|
— |
PTHR11716+57-189+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-202
|
5owc_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
22839.130
|
7.551
|
3.000
|
18.812
|
13.861
|
44.554
|
55.446
|
10.396
|
8.416
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
158.304
|
128.127
|
421.062
|
210.530
|
48.890
|
20.452
|
5.067
|
136.139
|
44.478
|
295.373
|
187.846
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.487
|
0.579
|
-0.891
|
-2.139
|
-1.243
|
-2.006
|
2.635
|
-4.610
|
— | — | — | — |
6.301
|