Hg_chrom4_TN10mRNA_7917
Organism: Heterodera glycines Gene Locus: chr4:5634800-5640246 Feature type: polypeptideProtein Sequence
Length: 1,442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 0.774 | 0.895 | 0.502 | 1.884 | 0.747 | 1.197 | 0.659 | 0.755 | 1.04 | 0.893 | 0.734 | 1.753 | 1.014 | 1.953 | 1.159 | 0.637 | 0.841 | 0.854 | 0.184 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7454
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.520
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRGRGRGGKEGRKKEH,RKEKEGEEVEGKTKRA,RRRRRSGKSKRKRAKV,KRPMAEGEVAKVRVKAR,RKGEGGTEEEGGRERER,KKEHETEEAKVVEDKINKK,RKEKEGGERNGGTEKGKGK,KRAEEEEGEGKEQLQRKRC,RKRCFELELRFRGDRLRRR,KRCFELELRFRGDRLRRRL
|
69-89
|
0.952
|
61-87
|
0.995
|
— | — |
0.000
|
— | — |
0.213
|
0.036
|
0.013
|
0.301
|
0.177
|
0.218
|
0.257
|
0.042
|
0.702
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002089
|
2.000
|
2.000
|
Hsc_gene_10363.t1;Hsc_gene_10363.t2
|
Hsc_gene_10363.t1;Hsc_gene_10363.t2
|
— |
Q5DRB8.1 Protocadherin gamma-A2 [Pan troglodytes]
|
KAI1717748.1 cadherin-99C [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005886|GO:0007155|GO:0007156|GO:0016020
|
GO:0008150_0.818|GO:0005575_0.762|GO:0110165_0.762|GO:0016020_0.634|GO:0032501_0.612|GO:0009987_0.586|GO:0032502_0.567|GO:0048856_0.567|GO:0007275_0.535|GO:0048731_0.526
|
IPR002126+218-237_871-955_883-957_960-1092_984-1090_1016-1042_1074-1091_1102-1213_1115-1209+|IPR015919+232-336_951-1045_1085-1203+|IPR020894+227-237_1080-1090+|IPR050174+891-1204+
|
SM00112+871-955_984-1090_1115-1209+
|
— | — |
PTHR24028+891-1204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;319-564;699-815;1442-1442
|
3.000
|
30-318;565-698;816-1441
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
161239.800
|
6.428
|
-1.500
|
33.010
|
9.362
|
51.248
|
48.752
|
16.782
|
16.227
|
48.613
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
greenyellow
|
800.704
|
316.948
|
599.594
|
1037.523
|
290.348
|
186.081
|
106.099
|
357.180
|
367.953
|
2141.951
|
1381.666
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
1.574
|
0.900
|
-1.868
|
-0.628
|
-0.799
|
0.836
|
-1.608
|
— | — |
-2.727
|
— | — |
No JSON data available for plots.