SCN Proteipedia

Hg_chrom4_TN10mRNA_7923

Organism: Heterodera glycines Gene Locus: chr4:5661094-5662955 Feature type: polypeptide

Protein Sequence

Length: 341

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.432	1.023	0.427	0.303	0.88	1.278	0.943	1.173	1.173	1.427	0.4	2.415	2.199	0.733	0.658	1.592	0.288	1.022	1.128	0.259	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7458	—	—	1.556	2.000	2.000	1.000	1.000	2.000	2.000	2.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	15-Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	lysosome_vacuole	—	—	—	—	—	—	—	—	0.000	—	—	0.099	0.178	0.093	0.141	0.428	0.619	0.463	0.025	0.514	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008625	1.000	1.000	Hsc_gene_13024.t1	Hsc_gene_13024.t1;Hsc_gene_13025.t1	—	Q28J44.1 Zinc transporter ZIP11 [Xenopus tropicalis]	XP_024504369.1 Zinc transporter ZIP11 [Strongyloides ratti];CEF65168.1 Zinc transporter ZIP11 [Strongyloides ratti]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020\|GO:0030001\|GO:0046873\|GO:0055085	GO:0008150_0.953\|GO:0005575_0.914\|GO:0110165_0.911\|GO:0009987_0.889\|GO:0016020_0.879\|GO:0003674_0.838\|GO:0071944_0.836\|GO:0051179_0.831\|GO:0005886_0.819\|GO:0051234_0.818\|GO:0006810_0.817\|GO:0005622_0.786\|GO:0043226_0.766\|GO:0055085_0.754\|GO:0043227_0.752\|GO:0005737_0.751\|GO:0043229_0.751\|GO:0043231_0.723\|GO:0006811_0.710\|GO:0034220_0.707\|GO:0005215_0.702\|GO:0022857_0.702\|GO:0098660_0.702\|GO:0006812_0.697\|GO:0030001_0.693\|GO:0098662_0.693\|GO:0098655_0.692\|GO:0098657_0.682\|GO:0000041_0.676\|GO:0015318_0.674\|GO:0015075_0.672\|GO:0008324_0.671\|GO:0006825_0.670\|GO:0006829_0.670\|GO:0035434_0.670\|GO:0071577_0.670\|GO:0071578_0.670\|GO:0098659_0.670\|GO:0098739_0.670\|GO:0099587_0.670\|GO:0005773_0.668\|GO:0022890_0.664\|GO:0046873_0.663\|GO:0046915_0.654\|GO:0005375_0.650\|GO:0005385_0.650\|GO:0012505_0.640\|GO:0005634_0.568\|GO:0005794_0.563	IPR003689+16-337+	—	PF02535+16-337+ZIP_Zinc_transporter	—	PTHR11040+17-338+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-341	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.748	36756.300	6.078	-2.000	15.836	12.610	38.123	61.877	8.211	7.625	51.320

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	royalblue	846.542	148.710	419.959	269.450	488.113	744.103	711.102	3468.229	711.167	826.621	777.141

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.269	0.720	-0.531	0.825	0.623	—	2.116	-2.145	—	—	—	—	—

No JSON data available for plots.

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