Hg_chrom4_TN10mRNA_7925
Organism: Heterodera glycines Gene Locus: chr4:5667124-5668814 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.07 | 1.126 | 0.792 | 0.501 | 1.009 | 1.18 | 0.807 | 1.695 | 0.646 | 1.014 | 0.624 | 1.139 | 1.48 | 1.071 | 1.384 | 0.761 | 1.35 | 0.954 | 1.304 | 1.068 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7460
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.283
|
0.276
|
0.016
|
0.555
|
0.347
|
0.183
|
0.384
|
0.003
|
0.272
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002090
|
3.000
|
1.000
|
Hsc_gene_13037.t1
|
Hsc_gene_13037.t1
|
— |
Q96SU4.2 Oxysterol-binding protein-related protein 9 [Homo sapiens]
|
KAF7638107.1 Oxysterol-binding protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0008150_0.824|GO:0005575_0.816|GO:0110165_0.812|GO:0009987_0.721|GO:0005622_0.716|GO:0016020_0.668|GO:0043226_0.630|GO:0043229_0.611|GO:0005737_0.590|GO:0043227_0.567|GO:0043231_0.562|GO:0003674_0.558|GO:0008152_0.515|GO:0071944_0.515
|
IPR000648+43-397_63-352+|IPR018494+175-185+|IPR037239+46-404+
|
— |
PF01237+63-352+Oxysterol-binding_protein
|
G3DSA:1.10.287.2720:FF:000001+73-138+Oxysterol-binding_OBPalpha
|
PTHR10972+43-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
351-413
|
1.000
|
1-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
46492.360
|
8.020
|
9.000
|
24.697
|
14.044
|
47.700
|
52.300
|
14.286
|
10.412
|
52.058
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
2979.852
|
24.875
|
56.415
|
163.755
|
499.855
|
7427.927
|
181.082
|
12223.492
|
198.936
|
5171.126
|
3040.187
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.948
|
2.582
|
1.647
|
1.579
|
3.907
|
-5.347
|
0.605
|
-5.928
|
-4.789
|
— |
-3.137
|
— | — |
No JSON data available for plots.