SCN Proteipedia

Hg_chrom4_TN10mRNA_7928

Organism: Heterodera glycines Gene Locus: chr4:5673200-5675895 Feature type: polypeptide

Protein Sequence

Length: 609

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.592	0.802	1.314	0.849	1.368	0.758	0.841	1.149	1.022	1.043	1.219	0.966	1.505	0.884	1.542	0.821	0.485	0.995	1.768	1.207	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom4_TN10gene_7463	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	golgi_apparatus	—	KRRP,RRVAEVWMDEYAEHLYKRR	—	—	—	—	—	—	0.000	—	—	0.106	0.093	0.003	0.167	0.528	0.270	0.902	0.006	0.087	0.452

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008628	1.000	1.000	Hsc_gene_10367.t1	Hsc_gene_10367.t1	—	A8Y236.2 Putative polypeptide N-acetylgalactosaminyltransferase 10 [Caenorhabditis briggsae]	KAF7634308.1 Polypeptide N-acetylgalactosaminyltransferase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.903\|GO:0003674_0.818\|GO:0008152_0.755\|GO:0044238_0.734\|GO:0003824_0.724\|GO:0009987_0.721\|GO:0009058_0.714\|GO:0016740_0.640\|GO:0005575_0.638\|GO:0110165_0.638\|GO:0140096_0.625\|GO:0044237_0.617\|GO:0043170_0.597\|GO:0016757_0.595\|GO:0016758_0.593\|GO:0019538_0.587\|GO:0008194_0.585\|GO:0044249_0.583\|GO:0004653_0.581\|GO:0008376_0.581\|GO:0009059_0.565\|GO:0016020_0.558\|GO:1901135_0.546\|GO:0005622_0.545\|GO:0043412_0.545\|GO:0036211_0.537\|GO:1901137_0.523\|GO:0009100_0.520\|GO:0070085_0.519\|GO:0006486_0.516\|GO:0009101_0.516\|GO:0043413_0.516\|GO:0006493_0.510\|GO:0043226_0.501	IPR000772+455-585_458-582_459-584+\|IPR001173+143-328+\|IPR029044+58-451_119-443+\|IPR035992+452-586+\|IPR045885+143-441+	SM00458+455-585+	PF00535+143-328+Glycosyl_transferase_family_2\|PF00652+458-582+Ricin-type_beta-trefoil_lectin_domain	G3DSA:2.80.10.50:FF:000011+452-598+Polypeptide_N-acetylgalactosaminyltransferase\|G3DSA:3.90.550.10:FF:000029+57-451+Polypeptide_N-acetylgalactosaminyltransferase	PTHR11675+7-582+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	607-609	1.000	1-606	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.661	70723.400	7.555	8.000	33.333	14.122	48.440	51.560	17.898	15.435	45.156

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	tan	1500.505	3192.955	1817.072	1566.884	1655.446	1998.671	2015.134	1574.703	1775.651	50.147	789.649

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.043	-1.164	-0.104	—	0.287	—	-0.449	0.499	4.964	—	5.112	—	—

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