Hg_chrom4_TN10mRNA_7929
Organism: Heterodera glycines Gene Locus: chr4:5676409-5678682 Feature type: polypeptideProtein Sequence
Length: 503
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.855 | 0.694 | 1.048 | 1.097 | 1.292 | 1.274 | 0.923 | 1.69 | 0.663 | 1.182 | 1.115 | 1.52 | 1.27 | 0.726 | 1.298 | 0.653 | 0.815 | 1.205 | 0.612 | 0.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7464
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
RKENLLEHCREMGKMFRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.234
|
0.443
|
0.167
|
0.564
|
0.349
|
0.362
|
0.164
|
0.087
|
0.197
|
0.184
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008629
|
1.000
|
1.000
|
Hsc_gene_10368.t1
|
Hsc_gene_10368.t1
|
— |
P91408.1 Ethanolamine-phosphate phospho-lyase homolog 1 [Caenorhabditis elegans]
|
KAI1726589.1 aminotransferase class-III domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008483|GO:0030170
|
GO:0005575_0.695|GO:0110165_0.695|GO:0003674_0.617|GO:0008150_0.616|GO:0005622_0.601|GO:0005737_0.550|GO:0016020_0.546
|
IPR005814+16-179_75-492_167-495+|IPR015421+108-388+|IPR015422+75-492+|IPR015424+67-494+
|
— |
PF00202+75-492+Aminotransferase_class-III
|
— |
PTHR45688+28-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
501-503
|
1.000
|
1-500
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
56530.620
|
7.581
|
9.500
|
30.616
|
10.934
|
48.111
|
51.889
|
17.097
|
13.519
|
48.310
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
1543.602
|
5093.765
|
2429.964
|
1111.320
|
1205.091
|
1620.367
|
2240.442
|
1299.906
|
942.626
|
420.970
|
644.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.298
|
-2.334
|
-1.019
|
— |
0.442
|
0.478
|
-0.419
|
0.927
|
— | — | — | — | — |
No JSON data available for plots.