Hg_chrom4_TN10mRNA_7932
Organism: Heterodera glycines Gene Locus: chr4:5682138-5683096 Feature type: polypeptideProtein Sequence
Length: 91
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.256 | 0.0 | 1.798 | 0.758 | 1.099 | 0.564 | 0.392 | 0.549 | 1.709 | 1.04 | 1.499 | 2.586 | 0.916 | 0.634 | 2.915 | 0.942 | 0.54 | 1.166 | 1.691 | 0.646 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7467
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.041
|
0.986
|
0.010
|
0.103
|
0.018
|
0.014
|
0.051
|
0.011
|
0.061
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008632
|
1.000
|
1.000
|
Hsc_gene_10371.t1
|
Hsc_gene_10371.t1
|
— |
P0C2B8.1 Large ribosomal subunit protein mL55 [Bos taurus]
|
XP_024504534.1 39S ribosomal protein L55, mitochondrial [Strongyloides ratti];CEF65334.1 39S ribosomal protein L55, mitochondrial [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005762
|
GO:0005575_0.920|GO:0110165_0.917|GO:0005622_0.860|GO:0043226_0.813|GO:0043229_0.809|GO:0016020_0.801|GO:0005737_0.764|GO:0043227_0.748|GO:0043231_0.747|GO:0008150_0.582|GO:0005739_0.567|GO:0009987_0.518
|
IPR018615+3-91+|IPR044884+2-46+
|
— |
PF09776+3-91+Mitochondrial_ribosomal_protein_L55
|
— |
PTHR34095+3-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-91
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
10985.880
|
10.405
|
7.500
|
41.758
|
8.791
|
53.846
|
46.154
|
25.275
|
16.484
|
38.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
868.687
|
514.117
|
518.523
|
520.475
|
612.004
|
439.322
|
659.436
|
443.166
|
62.356
|
2363.599
|
1377.352
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.218
|
-0.119
|
— |
0.202
|
-0.463
|
0.598
|
— |
0.717
|
-2.990
|
— | — | — | — |
No JSON data available for plots.