Hg_chrom4_TN10mRNA_7933
Organism: Heterodera glycines Gene Locus: chr4:5683091-5690065 Feature type: polypeptideProtein Sequence
Length: 1,279
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 0.909 | 0.981 | 0.647 | 0.977 | 1.243 | 1.229 | 1.212 | 1.425 | 1.194 | 0.474 | 1.196 | 1.52 | 0.887 | 1.468 | 0.793 | 0.82 | 1.102 | 0.18 | 0.437 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7468
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRVFPPYGLNGGEAAKRGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.359
|
0.194
|
0.087
|
0.702
|
0.189
|
0.218
|
0.190
|
0.273
|
0.136
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008633
|
1.000
|
1.000
|
Hsc_gene_10373.t1
|
Hsc_gene_10373.t1
|
— |
Q8K010.1 5-oxoprolinase [Mus musculus]
|
KAH7724318.1 5-oxoprolinase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0016787
|
GO:0005575_0.774|GO:0110165_0.768|GO:0003674_0.707|GO:0005622_0.675|GO:0005737_0.622
|
IPR002821+241-538+|IPR003692+744-1266+|IPR008040+17-221+|IPR045079+13-1262+|IPR049517+554-729+
|
— |
PF01968+241-538+Hydantoinase/oxoprolinase|PF02538+744-1266+Hydantoinase_B/oxoprolinase|PF05378+17-221+Hydantoinase/oxoprolinase_N-terminal_region|PF19278+554-729+Hydantoinase/oxoprolinase_C-terminal_domain
|
— |
PTHR11365+13-1262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;1244-1279
|
1.000
|
2-1243
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
139478.980
|
6.688
|
3.500
|
24.003
|
9.617
|
43.315
|
56.685
|
12.744
|
11.259
|
52.072
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
3059.378
|
3178.112
|
4884.062
|
3535.264
|
2732.448
|
3088.490
|
3242.616
|
3776.883
|
2575.425
|
2289.006
|
2411.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.391
|
— |
-0.358
|
-0.403
|
0.191
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.