Hg_chrom4_TN10mRNA_7934
Organism: Heterodera glycines Gene Locus: chr4:5683316-5684189 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 0.994 | 0.777 | 1.032 | 2.208 | 1.096 | 0.407 | 1.496 | 0.76 | 1.155 | 1.554 | 1.76 | 0.95 | 0.247 | 2.006 | 0.733 | 0.701 | 0.712 | 0.986 | 0.88 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom4_TN10gene_7469
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKCKARLMRHHQCLNRMRK,ELRGRTAKVIPLQRKIERRERRREEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.693
|
0.289
|
0.034
|
0.381
|
0.087
|
0.093
|
0.049
|
0.004
|
0.042
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008634
|
1.000
|
1.000
|
Hsc_gene_10372.t1
|
Hsc_gene_10372.t1
|
— |
Q6NYD4.1 Protein MAK16 homolog [Danio rerio]
|
KAF7634313.1 MAK16-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.916|GO:0110165_0.911|GO:0005622_0.910|GO:0043226_0.874|GO:0043229_0.866|GO:0016020_0.848|GO:0043227_0.792|GO:0043231_0.774|GO:0005634_0.761|GO:0008150_0.672|GO:0009987_0.643|GO:0043228_0.630|GO:0043232_0.630|GO:0031974_0.530|GO:0031981_0.530|GO:0043233_0.530|GO:0070013_0.530|GO:0071840_0.525
|
IPR006958+1-234_138-232+|IPR029004+6-117+
|
— |
PF01778+6-117+Ribosomal_L28e_protein_family|PF04874+138-232+Mak16_protein_C-terminal_region
|
G3DSA:3.30.390.110:FF:000001+2-131+Protein_MAK16_homolog
|
PTHR23405+1-234+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
182-234
|
1.000
|
1-181
|
8ev3_3
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
27869.770
|
8.769
|
9.500
|
40.598
|
10.684
|
58.547
|
41.453
|
23.077
|
17.521
|
36.752
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.